DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tbp and Tbpl2

DIOPT Version :9

Sequence 1:NP_523805.1 Gene:Tbp / 37476 FlyBaseID:FBgn0003687 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_001092831.1 Gene:Tbpl2 / 680050 RGDID:1596837 Length:344 Species:Rattus norvegicus


Alignment Length:368 Identity:185/368 - (50%)
Similarity:222/368 - (60%) Gaps:69/368 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QMLSPNFSIPSIGTPL--HQMEADQQIVANP--VYHP--PAVSQPDSLMPAPGSSSVQHQQQQQQ 61
            |:.||       |.||  |.:..     :||  |:|.  .||.:..|...:...|.:..:..|:.
  Rat    26 QLFSP-------GAPLDVHPLNP-----SNPETVFHSHLGAVKKAPSDFSSVDLSFLPDELTQEN 78

  Fly    62 SDAS-GGSGLFGHEPSLPLAHKQMQSYQPSASYQQQQQQQQLQSQAPGGGGSTPQSMMQPQTPQS 125
            .|.: .|:.:...|                 |::.|..|.|||.....|.|....|...|.|...
  Rat    79 KDRTVTGNKVTNEE-----------------SFRTQDWQSQLQLPDEQGSGLNLNSNSSPDTQSC 126

  Fly   126 MMAHMMPMSERSVGGSGAGGGGDALSNIHQTMGPSTP------------MTPATPGSADPGIVPQ 178
            :.:|                  ||.||   .:...||            |||..|.:...|||||
  Rat   127 LCSH------------------DADSN---QLSSETPNSNALPVVLISSMTPMNPVTECSGIVPQ 170

  Fly   179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDD 243
            |||:|||.||.|||||:||||:|:|.||||||||||||||||||||||||||||:|||||||||:
  Rat   171 LQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKSEDE 235

  Fly   244 SRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYR 308
            ||||||||||::||||||.:|.:|||||||.|||||||||||.|.|||..||||||||||||||:
  Rat   236 SRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSYEPELFPGLIYK 300

  Fly   309 MVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKK 351
            ||:|::|||||.||||||||||.|.|||:||:.::|||:.|||
  Rat   301 MVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKK 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TbpNP_523805.1 PLN00062 176..351 CDD:177693 140/174 (80%)
TBP_eukaryotes 176..349 CDD:239952 139/172 (81%)
Tbpl2NP_001092831.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..143 20/102 (20%)
PLN00062 168..344 CDD:177693 142/176 (81%)
TBP_eukaryotes 168..341 CDD:239952 139/172 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2101
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1219067at2759
OrthoFinder 1 1.000 - - FOG0001202
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100597
Panther 1 1.100 - - O PTHR10126
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1201
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.780

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