DRSC/TRiP Functional Genomics Resources

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Protein Alignment NC2alpha and NF-YC8

DIOPT Version :10

Sequence 1:NP_611601.2 Gene:NC2alpha / 37471 FlyBaseID:FBgn0034650 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_198143.1 Gene:NF-YC8 / 832857 AraportID:AT5G27910 Length:187 Species:Arabidopsis thaliana


Alignment Length:127 Identity:37/127 - (29%)
Similarity:61/127 - (48%) Gaps:19/127 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SKKKKYNARF-----PAGRIKKIMQSDEEIGKVAQAVPVIISRTLELFVESLLTKTLRI-TNARN 61
            ||:.:.|..|     |..||||||:.|.::..:|...|:::|:..|:|:..|   |:|. .:|:.
plant    23 SKEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDL---TMRSWLHAQE 84

  Fly    62 AK--TLSPSHMRQCIVSEKRFDFLKELVRNIPDISVAEEAAYNEDDVLRSSPEEQYPDSDTP 121
            :|  ||..|::...:.....||||.:     .||.|..|:.....|.:...|.:   |.:.|
plant    85 SKRVTLQKSNVDAAVAQTVIFDFLLD-----DDIEVKRESVAAAADPVAMPPID---DGELP 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NC2alphaNP_611601.2 HFD_DRAP1 9..83 CDD:467031 25/81 (31%)
NF-YC8NP_198143.1 HFD_NFYC-like 31..110 CDD:467033 26/81 (32%)

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