DRSC/TRiP Functional Genomics Resources

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Protein Alignment NC2alpha and Pole4

DIOPT Version :10

Sequence 1:NP_611601.2 Gene:NC2alpha / 37471 FlyBaseID:FBgn0034650 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001357224.1 Gene:Pole4 / 66979 MGIID:1914229 Length:172 Species:Mus musculus


Alignment Length:111 Identity:29/111 - (26%)
Similarity:49/111 - (44%) Gaps:3/111 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ARFPAGRIKKIMQSDEEIGKVAQAVPVIISRTLELFVESLLTKTLRITNARNAKTLSPSHMRQCI 74
            :|.|..|:|.::::|.::....|....|::|..|||||::.............|||....:...|
Mouse    40 SRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLDNAI 104

  Fly    75 VSEKRFDFLKELVRNIPD--ISVAEEAAYNED-DVLRSSPEEQYPD 117
            .:...|.||:.|...:..  |:..|.|.|... |.....|.|::|:
Mouse   105 EAVDEFAFLEGLFNKLQSTAINSYEPATYPASWDPSIYIPSEEFPE 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NC2alphaNP_611601.2 HFD_DRAP1 9..83 CDD:467031 18/72 (25%)
Pole4NP_001357224.1 HFD_POLE4-like 39..117 CDD:467054 20/76 (26%)

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