DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rae1 and RAE1

DIOPT Version :9

Sequence 1:NP_611597.1 Gene:Rae1 / 37467 FlyBaseID:FBgn0034646 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_178182.1 Gene:RAE1 / 844406 AraportID:AT1G80670 Length:349 Species:Arabidopsis thaliana


Alignment Length:354 Identity:168/354 - (47%)
Similarity:224/354 - (63%) Gaps:24/354 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FG--ATQSTNRMNDFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRCWEVEQNGATV---P 61
            ||  ||.::|....:||...|.||:|:|.|||   :.:.|||.|||:.|||||:.::||::   |
plant     4 FGAPATANSNPNKSYEVTPSPADSISSLSFSP---RADILVATSWDNQVRCWEISRSGASLASAP 65

  Fly    62 KSMKTMGGPVLDVCWSDDGSKVFVASCDKQVKLWDLAS-DQVMQVAAHDGPVKTCHMVKGPTYTC 125
            |:..:...|||...|.|||:.||...||||.|:|.|.| .|.:.||.|:||:.....:  |....
plant    66 KASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWI--PGMNL 128

  Fly   126 LMTGSWDKTLKFWDTRSPNPMMTINLPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYKRQE 190
            |.|||||||||:||||..||:.|..||::||...|::|:.|||||:|.||:::|||..||:||.:
plant   129 LATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQ 193

  Fly   191 SPLKYQHRAISIFRDKKKEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKCHRTTGTSGYQDIYAV 255
            ||||||.|.::.|.|::    |..:|||||||.:.:::......||||||||..     .|||:|
plant   194 SPLKYQTRCVTAFPDQQ----GFLVGSIEGRVGVHHLDDSQQSKNFTFKCHRDG-----NDIYSV 249

  Fly   256 NDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKCGFNANGQIFAYAVGYDWSKG 320
            |.:.|||||||..|.||||.|:|||||::.:||:....:|.|....||.:|.|:|||..||||||
plant   250 NSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSIYAYAACYDWSKG 314

  Fly   321 HEYFNPA-KKPQIFLRSCYD---ELKPRI 345
            .|..||| .|..|||....:   :.|||:
plant   315 AENHNPATAKSSIFLHLPQESEVKAKPRV 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rae1NP_611597.1 WD40 22..310 CDD:421866 140/291 (48%)
WD40 repeat 25..66 CDD:293791 20/43 (47%)
WD40 repeat 71..105 CDD:293791 17/34 (50%)
WD40 repeat 113..150 CDD:293791 18/36 (50%)
WD40 repeat 157..239 CDD:293791 37/81 (46%)
WD40 repeat 255..293 CDD:293791 22/37 (59%)
RAE1NP_178182.1 WD40 26..304 CDD:421866 140/291 (48%)
WD40 repeat 28..70 CDD:293791 20/44 (45%)
WD40 repeat 76..112 CDD:293791 17/35 (49%)
WD40 repeat 117..153 CDD:293791 18/37 (49%)
WD40 repeat 159..193 CDD:293791 18/33 (55%)
WD40 repeat 200..238 CDD:293791 14/41 (34%)
WD40 repeat 246..275 CDD:293791 19/28 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 93 1.000 Domainoid score I2566
eggNOG 1 0.900 - - E1_KOG0647
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2676
Inparanoid 1 1.050 318 1.000 Inparanoid score I713
OMA 1 1.010 - - QHG53489
OrthoDB 1 1.010 - - D1048963at2759
OrthoFinder 1 1.000 - - FOG0003056
OrthoInspector 1 1.000 - - oto3723
orthoMCL 1 0.900 - - OOG6_101883
Panther 1 1.100 - - LDO PTHR10971
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2897
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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