DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rae1 and Rae1

DIOPT Version :9

Sequence 1:NP_611597.1 Gene:Rae1 / 37467 FlyBaseID:FBgn0034646 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_006235754.1 Gene:Rae1 / 362281 RGDID:1311540 Length:372 Species:Rattus norvegicus


Alignment Length:349 Identity:240/349 - (68%)
Similarity:279/349 - (79%) Gaps:5/349 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFGATQSTNR--MNDFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRCWEVEQNGATVPKS 63
            |||:|.:.|.  |.|.||.|.||||:..|.|||.|:..|||:||||.:.||||||:.:|.|:||:
  Rat    21 MFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA 85

  Fly    64 MKTMGGPVLDVCWSDDGSKVFVASCDKQVKLWDLASDQVMQVAAHDGPVKTCHMVKGPTYTCLMT 128
            .:...||||||||||||||||.|||||..|:|||.|:|.:|:|.||.||||.|.:|.|.|:|:||
  Rat    86 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMT 150

  Fly   129 GSWDKTLKFWDTRSPNPMMTINLPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYKRQESPL 193
            ||||||||||||||.||||.:.||||||||||.||||||.||.||||:|.|:|.|:|::|.||||
  Rat   151 GSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPL 215

  Fly   194 KYQHRAISIFRDKKKEPTGCALGSIEGRVAIQYVNPGNP-KDNFTFKCHRTTG--TSGYQDIYAV 255
            |:|||.::||:||:.:|||.|||||||||||.|:||.|| ||||||||||:.|  ||..||||||
  Rat   216 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV 280

  Fly   256 NDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKCGFNANGQIFAYAVGYDWSKG 320
            |.||||||||||.||||||.|||||||||||||:||.:||.:..||||.||.|||||..||||||
  Rat   281 NGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPVAACGFNHNGNIFAYASSYDWSKG 345

  Fly   321 HEYFNPAKKPQIFLRSCYDELKPR 344
            ||::||.||..||||:..:|||||
  Rat   346 HEFYNPQKKNYIFLRNAAEELKPR 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rae1NP_611597.1 WD40 22..310 CDD:421866 203/290 (70%)
WD40 repeat 25..66 CDD:293791 22/40 (55%)
WD40 repeat 71..105 CDD:293791 25/33 (76%)
WD40 repeat 113..150 CDD:293791 27/36 (75%)
WD40 repeat 157..239 CDD:293791 58/82 (71%)
WD40 repeat 255..293 CDD:293791 33/37 (89%)
Rae1XP_006235754.1 WD40 44..339 CDD:421866 208/297 (70%)
WD40 repeat 46..88 CDD:293791 22/41 (54%)
WD40 repeat 94..129 CDD:293791 24/34 (71%)
WD40 repeat 134..172 CDD:293791 26/37 (70%)
WD40 repeat 178..212 CDD:293791 22/33 (67%)
WD40 repeat 219..262 CDD:293791 31/43 (72%)
WD40 repeat 280..330 CDD:293791 38/49 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340126
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0647
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2676
Inparanoid 1 1.050 517 1.000 Inparanoid score I1238
OMA 1 1.010 - - QHG53489
OrthoDB 1 1.010 - - D1048963at2759
OrthoFinder 1 1.000 - - FOG0003056
OrthoInspector 1 1.000 - - oto96438
orthoMCL 1 0.900 - - OOG6_101883
Panther 1 1.100 - - LDO PTHR10971
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2897
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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