DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rae1 and rae1

DIOPT Version :10

Sequence 1:NP_611597.1 Gene:Rae1 / 37467 FlyBaseID:FBgn0034646 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_596784.1 Gene:rae1 / 2539741 PomBaseID:SPBC16A3.05C Length:352 Species:Schizosaccharomyces pombe


Alignment Length:355 Identity:165/355 - (46%)
Similarity:217/355 - (61%) Gaps:21/355 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFG-ATQST------NRMNDFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRCWEVEQNGA 58
            :|| ||.||      :...|.|||.||:||:|.|.|||   |..:|.|.||||.||.:||:..|.
pombe     3 LFGQATTSTVSNATGDLKKDVEVAQPPEDSISDLAFSP---QAEYLAASSWDSKVRIYEVQATGQ 64

  Fly    59 TVPKSMKTMGGPVLDVCWSDDGSKVFVASCDKQVKLWDLASDQVMQVAAHDGPVKTCHMVKG-PT 122
            ::.|::....||||.|.||.||:||...|.||..|::|:.:.|..||||||..|:....|:. .|
pombe    65 SIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVFDIQTGQNQQVAAHDDAVRCVRFVEAMGT 129

  Fly   123 YTCLMTGSWDKTLKFWDTRSPNPMMTINLPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYK 187
            ...|.|||||||||:||.|...|:.|::||||.|..|..:|:..|.||.|.:.:.:|......:|
pombe   130 SPILATGSWDKTLKYWDLRQSTPIATVSLPERVYAMDCVHPLLTVATAERNICVINLSEPTKIFK 194

  Fly   188 RQESPLKYQHRAISIFRDKKKEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKCHRT-TGTSGYQD 251
            ...||||:|.|:::.|    .:..|.|:||:|||.|||.::..|...||:|:|||. .|.|.  |
pombe   195 LAMSPLKFQTRSLACF----IKGDGYAIGSVEGRCAIQNIDEKNASQNFSFRCHRNQAGNSA--D 253

  Fly   252 IYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKCGFNANGQIFAYAVGYD 316
            :|:||.|||||.:||..|.||||||||||||:..:|||...:..:|:...||..|.|||||:.||
pombe   254 VYSVNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYAISYD 318

  Fly   317 WSKGHEYFNPAKKP-QIFLRSC-YDELKPR 344
            ||||:. ||.|:.| :|.|... .||:|||
pombe   319 WSKGYT-FNNAQLPNKIMLHPVPQDEIKPR 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rae1NP_611597.1 WD40 <21..316 CDD:441893 136/296 (46%)
WD40 repeat 25..66 CDD:293791 18/40 (45%)
WD40 repeat 71..105 CDD:293791 15/33 (45%)
WD40 repeat 113..150 CDD:293791 17/37 (46%)
WD40 repeat 157..239 CDD:293791 28/81 (35%)
WD40 repeat 255..293 CDD:293791 25/37 (68%)
rae1NP_596784.1 WD40 <27..318 CDD:441893 138/299 (46%)
WD40 repeat 33..72 CDD:293791 18/41 (44%)
WD40 repeat 78..113 CDD:293791 16/34 (47%)
WD40 repeat 118..157 CDD:293791 18/38 (47%)
WD40 repeat 163..194 CDD:293791 8/30 (27%)
WD40 repeat 204..242 CDD:293791 15/41 (37%)
WD40 repeat 257..283 CDD:293791 19/25 (76%)

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