DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PTP-ER and ca16b

DIOPT Version :10

Sequence 1:NP_726092.1 Gene:PTP-ER / 37461 FlyBaseID:FBgn0016641 Length:1377 Species:Drosophila melanogaster
Sequence 2:XP_021332937.1 Gene:ca16b / 569183 ZFINID:ZDB-GENE-080818-1 Length:1382 Species:Danio rerio


Alignment Length:1283 Identity:245/1283 - (19%)
Similarity:393/1283 - (30%) Gaps:468/1283 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 EATRRDRSPALAEPPEQQ-------------QQKSEGRKNRKN---------KNNLTIRITDVPI 293
            |...|::||.....||.|             :.||..|...||         ||:..:|...:|.
Zfish    72 ECGERNQSPVDILDPETQVSQECQELTLDGFETKSSNRTTMKNTGKTVSIVLKNDYFVRGAGLPG 136

  Fly   294 K-------------NSSQPS--PLPKPKTPTIKS----TKEKARSLDSAANE----SELSIVVHN 335
            :             |.|..|  .:...|.|....    ..:...||.:|..|    :.:::....
Zfish   137 RFKAEKVEFHWGSTNGSAGSEHSINGKKFPVEMQIYFYNSDDFDSLSTAIKERRIIAAMAVFFQV 201

  Fly   336 ITESHGSCDDMETGQSQPSTSVIHHHLHLQQPASAIHSTSLSRLDSHLSLANQRRTPRRKSPGIN 400
            .|:.:.:.:.:..|..:    |:||.......:..:.....|.|.|:........||    |...
Zfish   202 ATKDNIAAEPIIAGLKR----VVHHEKETNLGSFILRDLLPSSLGSYYRYTGSLTTP----PCSK 258

  Fly   401 TTDW--------LMYHRKQNPYQV----QPTHCSSTTQ--------SSLDS---------DA--- 433
            ..:|        |.||:.:..|.:    |..|..|...        ..|||         ||   
Zfish   259 VVEWIIFSRPVYLSYHQLEAFYSIFTTEQQDHVKSVDYLRNNHRPIQDLDSRRIFKSALMDAWMP 323

  Fly   434 SLTPSLGDFELKSACSVDGGSKFGIGASLAPRSAHKHNQLLHSSSTNLKTL----PECL---TLV 491
            ....|..|.|....|                 |:...|..||..:.....|    |..:   .:|
Zfish   324 ETMASAADTETSRVC-----------------SSIPDNMKLHPLNRTALVLTWDRPSAVYHPPIV 371

  Fly   492 EFSSSGGGPK-ESPFKQKSMDLPMPTLQAKTTVSTSSMNLLQR--------RGSNHSLTL----- 542
            .|..|....| |.||::........:.:|..|:.:..:..|.|        :.|:.|.||     
Zfish   372 GFLVSYSWVKDEMPFEKTFTQSSEHSTRAVITLVSPDVLYLFRVQALCQRDQRSDFSQTLLFKAN 436

  Fly   543 ---------------------------NLHSSCGNLMNSGLSHSNYSLGSILNSKSSCNLDAGTA 580
                                       .:.|......::||..|..|:.:.:...||.. .|..|
Zfish   437 TTRIFEGTRIVKTGMPTVSPASSADMAPISSGSSTWTSAGLPFSFVSMATGMGPPSSGG-QATVA 500

  Fly   581 SQIRADQLPQSHLLGSSQGSRQGLFRRRGSNHSITLKTGHTTT----------SCGDLNSMQQLQ 635
            |.:.:..|......||...|..|.|....|.::....|.|..|          |....|.:::.:
Zfish   501 SVVTSTLLAGLGFSGSVISSLPGSFWPTHSTNTGPSPTQHPATPTAENSPSEDSTDTQNKLEEEE 565

  Fly   636 QQQAMLSAEKYNRLNMRTNSTGSGSGSGSNV----------------PTPKRGLLERRGSNQSLT 684
            :.:.....|:.................|.:|                ||.|....||..: :|.|
Zfish   566 EHKKEDDEEEEEEEEEEEQRDEEKKKKGKDVTVKDKKQTVQKPTAPIPTSKHRDRERPDA-ESST 629

  Fly   685 LNMGSILGGAAGTEIQMTDIVQPKVTVCSCAAANQAPHQRKFFSTENLNSSKANSQKFFGQVCFG 749
            |....:....:|                    |.:.|...        :||||..|         
Zfish   630 LTPAEVEEQVSG--------------------ATERPDAE--------DSSKATWQ--------- 657

  Fly   750 SASDLQ-PNPQQDSVR-EDQAIGATCTCAGTVRNIMTRPLSPQTTSEEFKIYLASIQMLQSASNP 812
            ..:|:| |:...:|.: .|:..........|.||.:: .:|..:.|...::......|:.||...
Zfish   658 DDNDMQIPSSSTESSKLSDEEKANWPYYINTERNSIS-TVSRDSVSSSSRMEWIIPLMVVSALTL 721

  Fly   813 LNQFDLIRLNYVFDHSYQTNRNIIEQPPVLGSNARDVETPTDMVPPSSEDSELLASYQTVVSRMA 877
            |....|:.:...:...:||....||.    .::.|.:...:..:..:::|.|.:.     |.:..
Zfish   722 LCLIMLLAVLVYWRRFFQTAHFYIED----RNSPRVIHNDSFPIISTADDLEAMP-----VRQFI 777

  Fly   878 QPIPELKENEQKRIFRDLHKEFWDLP------------LNHQEKPMVFGSQTKNRYKTILPNENS 930
            :.|.||..|.:    ....:||.::.            .||.|      ::.||||..|:..::|
Zfish   778 KHIMELHSNNR----HGFSQEFDEVQHCTSEMKITAEHSNHPE------NKHKNRYINIVAYDHS 832

  Fly   931 RVLLESESSELTSLLGEIKRTSSVTASEDLPYINANYIKGPDYV-SKCYVATQGPLPNTIFEFWL 994
            ||       :|..|.|:..:.|.        ||||||:.|  |. ::.|:|.||||.:|..:||.
Zfish   833 RV-------KLQQLPGKDSKHSD--------YINANYVDG--YKRARAYIAAQGPLKSTFEDFWR 880

  Fly   995 MIY-QNTQRYIRRCVDGGSSSSPHVDREQILQQYFQKIVMLTNFTEANRQKCAVYFPIELNEIFA 1058
            ||: |||                            ..|||:||..|..|:||..|:|.|.:|::.
Zfish   881 MIWEQNT----------------------------TVIVMITNLVEKGRRKCDQYWPSENSEVYG 917

  Fly  1059 VAAKCEVFQLSAAARDYFDRYLTPTFVPDTVVASSDAIDYEISGRHIGVESVKVTLEGDLLEALP 1123
                                                              ::.|||:...:.|..
Zfish   918 --------------------------------------------------NIMVTLKSTKVYAYY 932

  Fly  1124 AQGSFFLIKNVGIVR-RNGYSVRKLVLLYCIRVPQSASYHLQKIYCYHYWYPDWPDHHSPRDINT 1187
            .. ..|:::|..:.: :.|....:|||          .||          |..|||...|     
Zfish   933 TL-RHFIVRNSKLKKGQKGRQNERLVL----------QYH----------YTQWPDMGVP----- 971

  Fly  1188 LLDTCLHVLNLGKCESEFDIYDDTRSERNAHLAAQRLEIYQQDIFNAVQPLPV-IHCSAGIGRTG 1251
              :..|.||..                           |.:..:.:|....|| :|||||:||||
Zfish   972 --EYTLPVLKF---------------------------ISRSTVTHASSTGPVLVHCSAGVGRTG 1007

  Fly  1252 CFTAILNAVRQLRQSLAYSLTGMLTKSLTSSSTEEYHNPTDSDSSFTCNTIRHISHILDHRDAEA 1316
            .:..|.:.::|::                           |..|                     
Zfish  1008 TYIVIDSMLKQIK---------------------------DRGS--------------------- 1024

  Fly  1317 VKTPPSFDRLPKMPDIFVDVLGIVCNLRLQRGGMVQNSEQYELIHRAI 1364
                             |:|||.:.::|.||..:||..||:..||.|:
Zfish  1025 -----------------VNVLGFLKHIREQRNYLVQTEEQFIFIHDAL 1055

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTP-ERNP_726092.1 PTP_DSP_cys 919..1362 CDD:475123 95/446 (21%)
ca16bXP_021332937.1 alpha_CARP_receptor_like 62..314 CDD:239396 47/249 (19%)
FN3 340..417 CDD:214495 16/76 (21%)
PTP_DSP_cys 791..1060 CDD:475123 103/486 (21%)
R-PTP-G-2 1144..1348 CDD:350508
Blue background indicates that the domain is not in the aligned region.

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