DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PTP-ER and T27A3.5

DIOPT Version :9

Sequence 1:NP_726092.1 Gene:PTP-ER / 37461 FlyBaseID:FBgn0016641 Length:1377 Species:Drosophila melanogaster
Sequence 2:NP_491761.3 Gene:T27A3.5 / 188965 WormBaseID:WBGene00020841 Length:355 Species:Caenorhabditis elegans


Alignment Length:549 Identity:110/549 - (20%)
Similarity:166/549 - (30%) Gaps:261/549 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   845 NARDVETPTDMVPPSSED-------SELLASYQTVVSRMAQPIPELKENEQKRIFRD-------- 894
            |||..:.||..:...:||       .:..|..::.|.|.|....::.|    .|.||        
 Worm     9 NARKNQEPTSNMTIETEDGTQADRPKKRPAKKRSKVVRRAAQYGDVNE----PILRDFVKATIQT 69

  Fly   895 ----LHKEFWDLPLNHQ--EKPMV--FGSQTKNRYKTILPNENSRVLLESESSELTSLLGEIKRT 951
                |..||.:|.:..|  .||..  .|...|||||.:...:::||:|:                
 Worm    70 GVKQLSTEFLNLKMETQPCNKPKTGHEGHPEKNRYKDVYCIDDTRVVLK---------------- 118

  Fly   952 SSVTASEDLP--YINANYIK--GPDYVSKCYVATQGPLPNTIFEFWLMIYQNTQRYIRRCVDGGS 1012
                ..||.|  ||:||::|  |    :..::.||||...|:.:|:.:|:|              
 Worm   119 ----WPEDSPSDYIHANWVKING----ANKFICTQGPTEKTVDDFYRLIWQ-------------- 161

  Fly  1013 SSSPHVDREQILQQYFQKIVMLTNFTEANRQKCAVYFPIELNEIFAVAAKCEVFQLSAAARDYFD 1077
            ..:|.|             |||.|..|..::||..|:                            
 Worm   162 EKAPCV-------------VMLCNIMECGKKKCEQYW---------------------------- 185

  Fly  1078 RYLTPTFVPDTVVASSDAIDYEISGRHIGVESVKVTLEGDLLEALPAQGSFFLIKNVGIVRRNGY 1142
                    |:|.......:|        |..:||:        |.||:                 
 Worm   186 --------PETADGQMILMD--------GKLTVKI--------AEPAK----------------- 209

  Fly  1143 SVRKLVLLYCIRV--PQSASYHLQKIYCYHYWYPDWPDHHSPRDINTLLDTCLHVLNLGKCESEF 1205
            .|.:.:||..|.|  .:..|::.:     |:.:..|||...|                       
 Worm   210 EVEQNILLMKITVIDDKGTSHNFE-----HWQWKAWPDRGVP----------------------- 246

  Fly  1206 DIYDDTRSERNAHLAAQRLEIYQQDIFNAVQPLPVIHCSAGIGRTGCFTAILNAVRQLRQSLAYS 1270
                      ...:|..||.|.    .....|: |:||||||||||                  |
 Worm   247 ----------ELPMAVFRLLIR----LKTASPI-VVHCSAGIGRTG------------------S 278

  Fly  1271 LTGMLTKSLTSSSTEEYHNPTDSDSSFTCNTIRHISHILDHRDAEAVKTPPSFDRLPKMPDIFVD 1335
            :.|:....:...:.|:                                               |.
 Worm   279 IVGLEIALVKFCAGEK-----------------------------------------------VV 296

  Fly  1336 VLGIVCNLRLQRGGMVQNSEQYELIHRAI 1364
            :..||..:|.||.|.||...||..:||.:
 Worm   297 LKDIVKEIRNQRHGSVQTDAQYLFMHRVL 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTP-ERNP_726092.1 Y_phosphatase 916..1364 CDD:278528 87/453 (19%)
PTPc 917..1364 CDD:238006 87/452 (19%)
T27A3.5NP_491761.3 PTPc 73..326 CDD:214550 95/481 (20%)
PTPc 100..326 CDD:238006 87/454 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0789
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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