DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PTP-ER and ptp-5.3

DIOPT Version :9

Sequence 1:NP_726092.1 Gene:PTP-ER / 37461 FlyBaseID:FBgn0016641 Length:1377 Species:Drosophila melanogaster
Sequence 2:NP_490769.2 Gene:ptp-5.3 / 171660 WormBaseID:WBGene00021207 Length:483 Species:Caenorhabditis elegans


Alignment Length:699 Identity:111/699 - (15%)
Similarity:198/699 - (28%) Gaps:300/699 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   659 GSGSGSNVPTPKRGLLER-RGSNQSLTLNMGSILGGAAGTEIQMTDIVQPKVTVCSCAAANQAPH 722
            |...||..|.|.:|..:| ||                           :|::|.       |:..
 Worm    35 GGAKGSKKPKPSKGNDDRGRG---------------------------EPEMTA-------QSKK 65

  Fly   723 QRKFFSTENLNSSKANSQKFFGQVCFGSASDLQPNPQQDSVREDQAIGATCTCAGTVRNIMTRPL 787
            .:|.........:||.|.....:     :.::..:.::.:|.:|.|:..|.:.||.|        
 Worm    66 TKKAKKVRQKRDTKAPSPAMSPR-----SREMLSDNKKTTVEDDPAVPITTSVAGAV-------- 117

  Fly   788 SPQTTSEEFKIYLASIQMLQSASNPLNQFDLIRLNYVFDHSYQTNRNIIEQPP---VLGSNARDV 849
                        .::|..|.|..|..                        |||   :.|...:..
 Worm   118 ------------TSTIPALMSTENAF------------------------QPPKDLISGRKPKGA 146

  Fly   850 ETPTDMVPPSSEDSELLASYQTVVSRMAQPIPELKENEQKRIFRDLHKEFWDLPLNHQEKPMVFG 914
            ...:..||.|.:.|                   |.....|.:...:.|.:.|         .:..
 Worm   147 PNLSGSVPLSHKSS-------------------LTGGADKWVGEAVAKNWMD---------SIDT 183

  Fly   915 SQTKNRYKTILPNENSRVLLESESSELTSLLGEIKRTSSVTASEDLPYINANYIK-GPDYVSKCY 978
            ::.|..|..          |:|:..::.......|.......|||.|.:::|.:| |.|||:...
 Worm   184 AEVKKEYDK----------LQSQKIDVEKDCKTWKSNPKFNQSEDFPALDSNLVKLGKDYVNISL 238

  Fly   979 VAT---------QGPLPNTIFEFWLMIYQNTQRYIRRCVDGGSSSSPHVD---REQILQQYFQKI 1031
            |..         |.|:.||...||..::.      :|..        |:|   .::.::.:.:|.
 Worm   239 VDVPLGRNVHLGQAPVTNTEETFWKAVFD------KRIT--------HIDLLVGDETIEFFPKKA 289

  Fly  1032 VMLTNFTEA---NRQKCAVYFPIELNEIFAVAAKCEVFQLSAAARDYFDRYLTPTFVPDTVVASS 1093
            ...||:.:.   ||:       :|                               :|.|.|    
 Worm   290 EDYTNYGQMWINNRR-------VE-------------------------------YVNDDV---- 312

  Fly  1094 DAIDYEISGRHIGVESVKVTLEGDLLEALPAQGSFFLIKNVGIVRRNGYSVRKLVLLYCIRVPQS 1158
                |..:                 :|.:|...|..:|.||.::  :.:.|..:.|...|.:.::
 Worm   313 ----YRFA-----------------IEVVPHGCSNSIICNVTVI--SNWKVDTVPLKQAIAIKEA 354

  Fly  1159 --ASYHLQKIYCYHYWYPDWPDHHSPRDINTLLDTCLHVLNLGKCESEFDIYDDTRSERNAHLAA 1221
              .:|.|.|               :|.|.:.::                                
 Worm   355 LGLNYFLLK---------------APADEHAMI-------------------------------- 372

  Fly  1222 QRLEIYQQDIFNAVQPLPVIHCSAGIGRTGCFTAILNAVRQLRQSLAYSLTGMLTKSLTSSSTEE 1286
                         |.|       .|.||.|.|.|:..||..:...||......:.||:.|     
 Worm   373 -------------VSP-------RGAGRAGYFLALAVAVNTIDTKLAEPCIADIVKSIRS----- 412

  Fly  1287 YHNPTDSDSSFT-CNTIRHISHILDHRDAEAVKTPPSFDRLPKMPDIFV 1334
             ..|...||... |:....:.:.:..:    |..|...|:.|.:.:.::
 Worm   413 -QRPRAVDSFCQYCSLYISLLYFIKKK----VTKPAEGDKKPTLSNKYI 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTP-ERNP_726092.1 Y_phosphatase 916..1364 CDD:278528 72/438 (16%)
PTPc 917..1364 CDD:238006 72/437 (16%)
ptp-5.3NP_490769.2 PTPc 186..433 CDD:214550 68/408 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0789
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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