DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdc and SDC1

DIOPT Version :9

Sequence 1:NP_001163238.2 Gene:Sdc / 37447 FlyBaseID:FBgn0010415 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_005262677.1 Gene:SDC1 / 6382 HGNCID:10658 Length:334 Species:Homo sapiens


Alignment Length:491 Identity:103/491 - (20%)
Similarity:151/491 - (30%) Gaps:209/491 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 AASRPHDEIYIDDDSIEGSGGRG-GIHEDLEKD----PDYSGSGFGPDDEDAEPDQHSHSSHNTR 103
            |.|.||.|:     |:.|.|..| |..|.|::.    |....:...|:|:|...|          
Human    14 APSLPHLEL-----SLGGGGAAGEGRAESLDESEAMIPQIVATNLPPEDQDGSGD---------- 63

  Fly   104 ISQSSNSGINSKHNSNENYGKNSKNSNSDLISSRFNNNNNHNQIDNSQNINLNPNNNHQTNSGTI 168
                          .::|:..:...:..|:..|:                 ..|:....|...|.
Human    64 --------------DSDNFSGSGAGALQDITLSQ-----------------QTPSTWKDTQLLTA 97

  Fly   169 IGSSTTANNNNNHNININSQNGIISGSGSDIGGHSTGINSIAAHTPTQTSSTIPTTSTSTPMPTT 233
            |.:|.                            ..||:.:.||.|.|..:...|....:..:|..
Human    98 IPTSP----------------------------EPTGLEATAASTSTLPAGEGPKEGEAVVLPEV 134

  Fly   234 TPTATT--------PASTTTAAATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESS 290
            .|..|.        |..||....|.:      :||||.|.|       |:|......:|:     
Human   135 EPGLTAREQEATPRPRETTQLPTTHL------ASTTTATTA-------QEPATSHPHRDM----- 181

  Fly   291 GDGIDADAEDDDEDDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETG------HIPTTD 349
                                                :|||     |..:...|      |.|.|:
Human   182 ------------------------------------QPGH-----HETSTPAGPSQADLHTPHTE 205

  Fly   350 EIDVDGGDE------DDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPNTNVNSQPSDTKG 408
                |||..      :|...|.:                |.|.||...:....|:          
Human   206 ----DGGPSATERAAEDGASSQL----------------PAAEGSGEQDFTFETS---------- 240

  Fly   409 IDHRPNGNEVVIMSEDDR-------------TSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVY 460
                 ..|..|:..|.||             :.....:..:|..||.|.:|||:.|:.:|.|::|
Human   241 -----GENTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLY 300

  Fly   461 RMRKKDEGSYALDEPKRSPAN-NSYAKNANNREFYA 495
            ||:|||||||:|:|||:  || .:|.|.....||||
Human   301 RMKKKDEGSYSLEEPKQ--ANGGAYQKPTKQEEFYA 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdcNP_001163238.2 Syndecan 429..493 CDD:279386 28/64 (44%)
SDC1XP_005262677.1 Syndecan 269..332 CDD:279386 28/64 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165142170
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto88767
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10915
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.940

Return to query results.
Submit another query.