Protein Alignment Sdc and sdc4

DIOPT Version :10

• Sequence 1: NP_001163238.2
• Gene: Sdc / 37447
• FlyBaseID: FBgn0010415
• Length: 495
• Species: Drosophila melanogaster
• Sequence 2: NP_001041614.3
• Gene: sdc4 / 568593
• ZFINID: ZDB-GENE-061111-1
• Length: 207
• Species: Danio rerio
• Alignment Length: 218
• Identity: 67/218 - (30%)
• Similarity: 99/218 - (45%)
• Gaps: 66/218 - (30%)

  Fly   286 DTESSGDGIDADAE------DDDED--DGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVET 342
            |.||||:..:.|.|      .||||  |.||:| ||:       |:.|                :
Zfish    38 DLESSGNSQNEDFEFTDLNQTDDEDGFDEDDED-DYD-------DMSG----------------S 78

  Fly   343 GHIPTTDEIDVDGGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHE--LDPNTNVNSQPSD 405
            |.....|:|      ||:..::.|.           .::||.|....|.|  |..|..|..:.:.
Zfish    79 GFADVIDDI------EDEFVNNQIP-----------DDKGPFAPRPTVDENILVQNNEVFLRGAP 126

  Fly   406 TKGIDHRPNGNEVVIMSE--DDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVY---RMRKK 465
            .:.:|:..|    |:|:.  ||   |.|:...:|||||.|..|||:.|||:::.:|:   |::||
Zfish   127 NQDLDNHSN----VLMTHAGDD---SLFNNTEVLAAVIAGGAVGLVFAILLIVLLVHFVLRIKKK 184

  Fly   466 DEGSYALDEP---KRSPANNSYA 485
            |||||.|.:.   |::|....||
Zfish   185 DEGSYDLGKTPIYKKAPTTEIYA 207

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sdc	NP_001163238.2	Syndecan	429..493	CDD:460035	28/63 (44%)
sdc4	NP_001041614.3	None