Protein Alignment Sdc and sdc2

DIOPT Version :10

• Sequence 1: NP_001163238.2
• Gene: Sdc / 37447
• FlyBaseID: FBgn0010415
• Length: 495
• Species: Drosophila melanogaster
• Sequence 2: NP_775330.2
• Gene: sdc2 / 282667
• ZFINID: ZDB-GENE-021206-3
• Length: 208
• Species: Danio rerio
• Alignment Length: 198
• Identity: 60/198 - (30%)
• Similarity: 84/198 - (42%)
• Gaps: 69/198 - (34%)

  Fly   347 TTDEIDVD----GGDEDDNGDSDIDGPRIGGNDGDITERGPGAGGSNVHELDPNTNVN------- 400
            |||::.::    ||..:|:.|               ...|.|:|...|.| ||.| ||
Zfish    31 TTDDLYLEEAGSGGYPEDDDD---------------FSSGSGSGAGEVIE-DPVT-VNTLFFVPK 78

  Fly   401 SQPSDTKGIDHRPNGNEV-----------------VIMSEDDR---------------------T 427
            ::|:.....|..|....|                 |.::||.|                     :
Zfish    79 AEPTQDSTKDFTPKVETVTSQDAPKDSKKRRIEVAVPVTEDSRRNPVTSTTSIPRPPMDPQDVQS 143

  Fly   428 SSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPANNSYAKNANNRE 492
            .:.|.:..:|||||.|.|:|.|.||.:::.:||||||||||||.|.|  |.|:..:|.| |..:|
Zfish   144 ENLFQRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGE--RKPSGAAYQK-APTKE 205

  Fly   493 FYA 495
            |||
Zfish   206 FYA 208

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sdc	NP_001163238.2	Syndecan	429..493	CDD:460035	31/63 (49%)
sdc2	NP_775330.2	Syndecan	145..207	CDD:460035	32/64 (50%)