DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdc and Sdc1

DIOPT Version :10

Sequence 1:NP_001163238.2 Gene:Sdc / 37447 FlyBaseID:FBgn0010415 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_037158.1 Gene:Sdc1 / 25216 RGDID:3648 Length:313 Species:Rattus norvegicus


Alignment Length:360 Identity:91/360 - (25%)
Similarity:130/360 - (36%) Gaps:120/360 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 NININSQNGIISGSGSD-IGGHSTGINSIAAHTPTQT-SSTIPTTSTSTPMPTTTPTATTPASTT 244
            |:....|:|  ||..|| ..|..||.      .|..| |...|:|.....:.|.||||..|.|..
  Rat    28 NVPPEDQDG--SGDDSDNFSGSGTGA------LPDMTLSRQTPSTWKDVWLLTATPTAPEPTSRD 84

  Fly   245 TAAATQISSFANSSSTTTTTLAPTIPA-------EP-----QQPLFPPFDKDLD----------- 286
            |.|                ||...:||       ||     .:|.|...||:.:           
  Rat    85 TEA----------------TLTSILPAGEKPEEGEPVAHVEAEPDFTARDKEKEATTRPRETTQL 133

  Fly   287 -----TESSGDGIDADAEDDDEDDGDDKDYDYNKELDKEIDIDGP-EPGHLPPVVHHNTVETGHI 345
                 ..::.....|.|.......|     |....|.:.:....| :|.|.||     :||.|..
  Rat   134 PVTQQASTAARATTAQASVTSHPHG-----DVQPGLHETLAPTAPGQPDHQPP-----SVEDGGT 188

  Fly   346 PTTDEIDVD-----------GGDEDDNGDSDIDGPRIGGNDGDITERGP---GAGGSNVHELDPN 396
            ....|:..|           .|::|...::..:...:.|.:.|:..:.|   ||.|::...||  
  Rat   189 SVIKEVVEDETTNQLPAGEGSGEQDFTFETSGENTAVAGVEPDLRNQSPVDEGATGASQGLLD-- 251

  Fly   397 TNVNSQPSDTKGIDHRPNGNEVVIMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYR 461
                                                :..:|..||.|.:|||:.|:.:|.|::||
  Rat   252 ------------------------------------RKEVLGGVIAGGLVGLIFAVCLVAFMLYR 280

  Fly   462 MRKKDEGSYALDEPKRSPAN-NSYAKNANNREFYA 495
            |:|||||||:|:|||:  || .:|.|.....||||
  Rat   281 MKKKDEGSYSLEEPKQ--ANGGAYQKPTKQEEFYA 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdcNP_001163238.2 Syndecan 429..493 CDD:460035 28/64 (44%)
Sdc1NP_037158.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..58 12/37 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 95..186 19/100 (19%)
Syndecan 248..309 CDD:460035 30/100 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..313 14/28 (50%)

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