Protein Alignment Sdc and sdn-1

DIOPT Version :9

• Sequence 1: NP_001163238.2
• Gene: Sdc / 37447
• FlyBaseID: FBgn0010415
• Length: 495
• Species: Drosophila melanogaster
• Sequence 2: NP_741894.1
• Gene: sdn-1 / 181259
• WormBaseID: WBGene00004749
• Length: 288
• Species: Caenorhabditis elegans
• Alignment Length: 406
• Identity: 98/406 - (24%)
• Similarity: 140/406 - (34%)
• Gaps: 166/406 - (40%)

  Fly   118 SNENYGKNSKNSN---SDLISSRFNNNNNHNQIDNSQNINLNPNNNHQTNSGTIIGSSTTANNNN 179
            |.:.:..|...:.   |..||::...|....|::.|.||           .|.:.
 Worm    21 STQAFAANQAKTKVVPSSTISTKSLKNGISEQVEGSANI-----------PGRLA---------- 64

  Fly   180 NHNININSQNGIISG------SGSDIGGHSTGINSIAAHTPTQTSSTIPTTSTSTPMPTTTPTAT 238
              :|.:|.     ||      .|.|:  |.:|....:|.|.:. ..|.|:.:..|..|||.|
 Worm    65 --DIEVNG-----SGYPTDDEDGDDV--HGSGKPPSSATTKSD-KVTSPSHAVVTAKPTTVP--- 116

  Fly   239 TPASTTTAAATQISSFANSSSTTTTTLAPTIPAEPQQPLFPPFDKDLDTESSGDGIDADAEDDDE 303
                                 |||.:..|     |.||...|...|.:.:     ::.|.:||::
 Worm   117 ---------------------TTTASFKP-----PVQPKPKPAANDKEIK-----VEEDEDDDED 150

  Fly   304 DDGDDKDYDYNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIPTTDEIDVDGGDEDDNGDSDIDG 368
            :|.||:|                                              ||:|..|.:|.
 Worm   151 EDEDDED----------------------------------------------DEEDFADENIH- 168

  Fly   369 PRIGGNDGDI---------------TERGPGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEV 418
                 ||.|.               |...|.:..:|.....|       |..|..|...|
 Worm   169 -----NDEDFFTTTTTTTYRPIVVATTSTPRSAATNPPRQQP-------PMVTSTISSGP----- 216

  Fly   419 VIMSEDDRTSSFFS--QPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPK--RSP 479
                    .|.|..  ..|..||:.||.:|.::.|||:|:|:|:|:||||||||||||||  |..
 Worm   217 --------FSPFHETLANGFYAAIAGGVLVAVITAILLVLFVVFRIRKKDEGSYALDEPKQARPY 273

  Fly   480 ANNSYAKNANNREFYA 495
            |:..|.| |:.:||||
 Worm   274 ASYGYTK-ASTKEFYA 288

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sdc	NP_001163238.2	Syndecan	429..493	CDD:279386	33/67 (49%)
sdn-1	NP_741894.1	Syndecan	227..286	CDD:279386	32/59 (54%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160159259
Domainoid	1	1.000	66	1.000	Domainoid score	I6585
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	71	1.000	Inparanoid score	I3894
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0003556
OrthoInspector	1	1.000	-	-		oto19427
orthoMCL	1	0.900	-	-		OOG6_114026
Panther	1	1.100	-	-	LDO	PTHR10915
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4983
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	9	9.010