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Protein Alignment Acox57D-d and Ivd

DIOPT Version :9

Sequence 1:	NP_523803.1	Gene:	Acox57D-d / 37446	FlyBaseID:	FBgn0034629	Length:	677	Species:	Drosophila melanogaster
Sequence 2:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus

Alignment Length:	414	Identity:	93/414 - (22%)
Similarity:	145/414 - (35%)	Gaps:	113/414 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 GYGLNHEYMSH----EEVYNSTVKKVAEAAVKLKALQNKLNPGGTDIWPGGLFNAQSFGLFPANH 118
            |.||.  |:.|    ||:..      |.|||.|                       |:|
  Rat   101 GSGLG--YLEHVLVMEEISR------ASAAVGL-----------------------SYG------ 128

  Fly   119 PIATHITMFVDVIKGQGTAEQVEKWGKAAENCNIIGTYAQTELAHGTNVRGLATRADFDPKTDEF 183
               .|..:.::.|...|...|.||:.....:...||..|.:|...|::|..:..:|  :.|.|.:
  Rat   129 ---AHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKA--EKKGDHY 188

  Fly   184 VLNTPNLEAYKWWPGGLGHTANHAMVVAQ--LYIADVHHGVQMFIVPLRDSETHMPLPGVDIGEI 246
            |||     ..|:|... |..|:..:|.|:  |.......|:..|||       ...:||....:.
  Rat   189 VLN-----GNKFWITN-GPDADVLVVYAKTDLTAVPASRGITAFIV-------EKDMPGFSTSKK 240

  Fly   247 GKKLGMASVNQGFLGLNHVRIPRTNMLMKFAKVERDGTFKASPASRINYLTMVYTRCLIVS--QN 309
            ..||||...|...|.....::|..|:|.:    |..|.:                  :::|  ..
  Rat   241 LDKLGMRGSNTCELVFEDCKVPAANILSQ----ESKGVY------------------VLMSGLDL 283

  Fly   310 STLLLAAATIATRYSAVRRQSPIEPNQPEPQIIDHVTQRLKLFPEIATGIAYHLATEYM-WEMYA 373
            ..|:||...:..      .|:.::...|...:.:...|::..| ::..|....:.|..| ...|.
  Rat   284 ERLVLAGGPLGI------MQAVLDHTIPYLHVREAFGQKIGQF-QLMQGKMADMYTRLMACRQYV 341

  Fly   374 QTVQEANNGKFERLPDMHILS--CALKVLCTTDGCA------GIEKLRLSTGGHGYLIAANLSNI 430
            ..|..|       ..:.||.:  ||..:|.|.: ||      ||:.|    ||:||:....:...
  Rat   342 YNVARA-------CDEGHITAKDCAGVILYTAE-CATQVALDGIQCL----GGNGYINDFPMGRF 394

  Fly   431 YGNAVAAYTYEGENTVLLLQIGRA 454
            ..:|.......|.:.|..|.||||
  Rat   395 LRDAKLYEIGGGTSEVRRLVIGRA 418

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.