DRSC/TRiP Functional Genomics Resources

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Protein Alignment Acox57D-p and gcdhb

DIOPT Version :9

Sequence 1:NP_001286677.1 Gene:Acox57D-p / 37445 FlyBaseID:FBgn0034628 Length:677 Species:Drosophila melanogaster
Sequence 2:NP_001006024.1 Gene:gcdhb / 450003 ZFINID:ZDB-GENE-041010-117 Length:427 Species:Danio rerio


Alignment Length:480 Identity:99/480 - (20%)
Similarity:167/480 - (34%) Gaps:134/480 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TTVNP-DLQKERDAASFNSEEFAAWWAGG--------EEVLKFNRGVREYMEKDVDLSEMLQLQN 65
            |..:| |.:|..:.....:.:....|...        ||.:......|.|.::  .|...:.:.|
Zfish    27 TAASPWDAEKSGERKQMKAPKVQFNWRDALDLEGLLTEEEIMIRDSFRTYCQE--KLMPRILMAN 89

  Fly    66 KT---HEEII----EFSTRG-AIEGAKKLRRLQEERNPGGDVYWPNLYDAQVMWGL-------VP 115
            :.   |.||:    |....| .|:|          ....|..|        |.:||       |.
Zfish    90 RNEIFHREIVSEMGELGVLGPTIKG----------YGCAGTSY--------VAYGLIAREVERVD 136

  Fly   116 GG--NPFGVMYVMLVKALQAQCTPEQYEEFGKRVELFEICGTYAQTELGHGTYLRGLETRADFDR 178
            .|  :...|...:::..:.|..|.||.:::..|:...||.|.:..||..||:....:||:|.::.
Zfish   137 SGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPRLAQGEILGCFGLTEPNHGSDPGSMETKAKYNS 201

  Fly   179 KTDQFVLNTPNISSYKWWPGGLGHS--SNHCLVMAQLYIDGDCKGPHMFFIQVRDEDTHEPLPGV 241
            .:..|.|     :..|.|   :.:|  ::.|:|.|:.. ||..:|    ||..|.      :.|:
Zfish   202 SSHTFTL-----TGSKTW---ITNSPVADICVVWAKCE-DGKVRG----FILERG------MKGL 247

  Fly   242 HIGDIGKKMGFIGVNNGFLGLKNVRIPRTRMLMRHAQVKADGSYVSSPTNVLTYFAMVRTRCVIA 306
            ....|..|........|.:.:..|.:|...:|     .||.|  ::.|...|             
Zfish   248 STPKIEGKFSLRASATGMIIMDEVEVPEENLL-----PKASG--LAGPFGCL------------- 292

  Fly   307 KNNA-VMLASAATIATRYSAVRRQSPINPNEREPQIMDHVTQQMKL------FPEIATSVAYRKA 364
             ||| ..:|..|..|..:..                  |..:|..|      .|.....:..:|.
Zfish   293 -NNARYGIAWGALGAAEFCF------------------HAARQYTLDRIQFGVPLARNQLMQKKM 338

  Fly   365 GDYLWNLYDVTI---EDIENGKY----ERLPELHSL----SCALKVTCSMDSASGVEKLRLACGG 418
            .|.   |.::|:   ..::.|:.    :..||:.||    ||..    ::|.|   .:.|...||
Zfish   339 ADM---LTEITLGLQSCLQLGRLIDDKKAAPEMISLLKRNSCGK----ALDIA---RQARDMLGG 393

  Fly   419 HGFLTSSNMSSIYVSATAACTYEGE 443
            :|.....::....::..|..||||:
Zfish   394 NGIADEYHIIRHVLNLEAVNTYEGQ 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Acox57D-pNP_001286677.1 ACAD 14..653 CDD:299127 98/476 (21%)
PLN02443 16..677 CDD:178062 96/473 (20%)
gcdhbNP_001006024.1 GCD 50..418 CDD:173840 94/455 (21%)
CaiA 62..426 CDD:224871 94/445 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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