DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gyg and PGSIP8

DIOPT Version :9

Sequence 1:NP_001286666.1 Gene:Gyg / 37419 FlyBaseID:FBgn0265191 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_193393.4 Gene:PGSIP8 / 827361 AraportID:AT4G16600 Length:494 Species:Arabidopsis thaliana


Alignment Length:256 Identity:68/256 - (26%)
Similarity:109/256 - (42%) Gaps:59/256 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KFAWVTL----TTND-TYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDRLKEVYNVVQEVN 62
            |.|:.|:    |..| .:.:...||..|||.......:.|:.:.:|.             :..::
plant    58 KNAYATMMYMGTPRDYEFYVATRVLIRSLKSLHVDADIVVIASLDVP-------------INWIH 109

  Fly    63 VLDSQDAANLALLSRPE------------LGVTFTKLHCWRLVQFEKCVFLDADTLVLQNCDELF 115
            .|:.:|.|.:..:...|            ..::..||:.|.|..:::.|.||.|.|.|:|.||||
plant   110 ALEEEDGAKVVRVENLENPYKKQTNFDNRFKLSLNKLYAWSLSDYDRVVMLDVDNLFLKNTDELF 174

  Fly   116 EREELSAAPDVSWPDCFNSGVFVFKPSVDTFA-QITEFAVKNGSFDGGDQGLLNQFFADW----- 174
            :..:..|.  ...|..|::|:||.:||::.|. .:.|..||..:.||.|||.|..:|:|.     
plant   175 QCGQFCAV--FINPCIFHTGLFVLQPSMEVFRDMLHELEVKRDNPDGADQGFLVSYFSDLLNQPL 237

  Fly   175 ------STADIKKH--LPFVYNVTAYASYCYLPAFKQFRDKI-----KILHFAGK--LKPW 220
                  :...:|.|  ||..|.:.  |||.||    :.|..:     .::.|.|.  ||||
plant   238 FRPPPDNRTALKGHFRLPLGYQMD--ASYYYL----KLRWNVPCGPNSVITFPGAVWLKPW 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GygNP_001286666.1 GT8_Glycogenin 4..253 CDD:133018 67/255 (26%)
RfaJ <94..251 CDD:224359 48/148 (32%)
PGSIP8NP_193393.4 GT8_Glycogenin 59..298 CDD:133018 67/255 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1424146at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11183
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

Return to query results.
Submit another query.