DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lapsyn and Lrrc24

DIOPT Version :9

Sequence 1:NP_611561.1 Gene:Lapsyn / 37418 FlyBaseID:FBgn0034602 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_001129368.1 Gene:Lrrc24 / 362945 RGDID:1308720 Length:521 Species:Rattus norvegicus


Alignment Length:181 Identity:49/181 - (27%)
Similarity:76/181 - (41%) Gaps:36/181 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RCYD-------LDLKEVPQNLKSSVEVLDLSHNRIRKLKTSSFQRYTDIKFLMLYDNMILSVEVG 100
            |||.       |.|:.||..:....:.                        |.|.||.|..:|.|
  Rat    36 RCYSATVECGALRLRVVPPGIPPGTQT------------------------LFLQDNSIAHLEQG 76

  Fly   101 TFEPLTSLQEIDLSNNGLTTIPLELFQL-PRLRNLYIDSNELTSLNLQALEKPIRAPLEYLNVAG 164
            ...||.:|:.:.|.||.|..:....|:. |||..|.:..|.|..|...|....::  |..|.:||
  Rat    77 ALAPLAALRHLYLHNNTLRALESGAFRAQPRLLELALTGNRLRGLRGGAFVGLVQ--LRVLYLAG 139

  Fly   165 CELQELPDLGI--LPKLWQLNASMNPLQNFRIDSLANMCHLQVIDLTKSQL 213
            .:|.:|.|...  ||:|.:|:...|.::.....:||.:..|.::||:::||
  Rat   140 NQLAKLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQL 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LapsynNP_611561.1 leucine-rich repeat 39..59 CDD:275380 7/22 (32%)
LRR_8 58..118 CDD:290566 13/59 (22%)
leucine-rich repeat 60..83 CDD:275380 0/22 (0%)
leucine-rich repeat 84..107 CDD:275380 9/22 (41%)
LRR_RI <94..>249 CDD:238064 38/123 (31%)
LRR_8 106..167 CDD:290566 18/61 (30%)
LRR_4 106..145 CDD:289563 12/39 (31%)
leucine-rich repeat 108..130 CDD:275380 6/22 (27%)
leucine-rich repeat 131..154 CDD:275380 6/22 (27%)
leucine-rich repeat 157..178 CDD:275380 8/22 (36%)
leucine-rich repeat 179..202 CDD:275380 5/22 (23%)
Lrrc24NP_001129368.1 leucine-rich repeat 61..83 CDD:275380 9/45 (20%)
PPP1R42 63..>212 CDD:411060 42/130 (32%)
LRR_8 84..142 CDD:404697 18/59 (31%)
leucine-rich repeat 84..107 CDD:275380 6/22 (27%)
leucine-rich repeat 108..131 CDD:275380 6/22 (27%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380 5/22 (23%)
leucine-rich repeat 180..203 CDD:275380 5/11 (45%)
PCC 188..>259 CDD:188093 2/3 (67%)
Ig_3 267..357 CDD:404760
Ig strand A 267..271 CDD:409353
Ig strand A' 276..280 CDD:409353
Ig strand B 283..292 CDD:409353
Ig strand C 298..304 CDD:409353
Ig strand D 330..333 CDD:409353
Ig strand E 336..342 CDD:409353
Ig strand F 349..357 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24366
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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