DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lapsyn and haf

DIOPT Version :9

Sequence 1:NP_611561.1 Gene:Lapsyn / 37418 FlyBaseID:FBgn0034602 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_001356954.1 Gene:haf / 33339 FlyBaseID:FBgn0261509 Length:1347 Species:Drosophila melanogaster


Alignment Length:260 Identity:57/260 - (21%)
Similarity:107/260 - (41%) Gaps:83/260 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 CTYGHIDKLLRIRCYDLD--------------------------LKEVPQNLKSSVEV--LDLSH 67
            |.| ::.:.|.::|..:|                          :.|:|..:.|::.:  |.||.
  Fly    50 CAY-NLGRELSVQCDQVDFSQLLAAMNTHARLKPVDLLYVNNSTISELPDAVFSNLSLHNLQLSS 113

  Fly    68 NRIRKLKTSSFQ-RYTDIKFLMLYDNMILSVEVGTFEPLTSLQEIDLSNNGLTTIPLELF-QLPR 130
            ..|:::.|.:|: :.:.::.|.|.||::..|.|...:.|..|..:|||.|.|:.||.:.| .|.:
  Fly   114 CGIQRIATGAFKGQESVLRNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTK 178

  Fly   131 LRNLYIDSNELT--------------SLNLQA-----LEKPIRA--PLEYLNVAGCELQELPDLG 174
            |..|.::.|.:|              :|||:.     :.:.||.  .|.:|:::...::|||..|
  Fly   179 LSTLKLNDNNVTLASNAFRGLEQSLKNLNLKGTKQRKVPESIRGLKSLAFLDLSQNGIKELPGAG 243

  Fly   175 ------ILPKLWQLNASMNPLQN-------------------------FRIDSLANMCHLQVIDL 208
                  .|..|..||...|.:|:                         |.|.::.::..|:|:|:
  Fly   244 GIRVFDGLDALTALNLERNLIQSIGETAFAGVRKTLSSLSLLNNLLAEFPIGAVHSLKELRVLDI 308

  Fly   209  208
              Fly   309  308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LapsynNP_611561.1 leucine-rich repeat 39..59 CDD:275380 5/45 (11%)
LRR_8 58..118 CDD:290566 19/62 (31%)
leucine-rich repeat 60..83 CDD:275380 6/25 (24%)
leucine-rich repeat 84..107 CDD:275380 7/22 (32%)
LRR_RI <94..>249 CDD:238064 39/168 (23%)
LRR_8 106..167 CDD:290566 21/82 (26%)
LRR_4 106..145 CDD:289563 14/53 (26%)
leucine-rich repeat 108..130 CDD:275380 10/22 (45%)
leucine-rich repeat 131..154 CDD:275380 7/41 (17%)
leucine-rich repeat 157..178 CDD:275380 7/26 (27%)
leucine-rich repeat 179..202 CDD:275380 7/47 (15%)
hafNP_001356954.1 LRR <52..>252 CDD:227223 45/200 (23%)
leucine-rich repeat 86..105 CDD:275380 3/18 (17%)
leucine-rich repeat 106..129 CDD:275380 6/22 (27%)
LRR_8 131..189 CDD:338972 20/57 (35%)
leucine-rich repeat 131..154 CDD:275380 7/22 (32%)
leucine-rich repeat 155..178 CDD:275380 10/22 (45%)
leucine-rich repeat 179..202 CDD:275380 4/22 (18%)
leucine-rich repeat 203..225 CDD:275380 5/21 (24%)
leucine-rich repeat 226..253 CDD:275380 7/26 (27%)
LRR_8 254..337 CDD:338972 10/55 (18%)
leucine-rich repeat 254..302 CDD:275380 7/47 (15%)
leucine-rich repeat 303..326 CDD:275380 3/6 (50%)
leucine-rich repeat 327..350 CDD:275380
PCC 332..>413 CDD:188093
PRK10927 <1061..>1097 CDD:236797
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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