DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lapsyn and iglr-1

DIOPT Version :9

Sequence 1:NP_611561.1 Gene:Lapsyn / 37418 FlyBaseID:FBgn0034602 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_510491.2 Gene:iglr-1 / 184720 WormBaseID:WBGene00008977 Length:695 Species:Caenorhabditis elegans


Alignment Length:228 Identity:59/228 - (25%)
Similarity:90/228 - (39%) Gaps:68/228 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 HIDKLLRIRCYDLDLKEVPQNL---KSSVEVLDLSHNRIRKLKTSSFQRYTDIKFLMLYDNMILS 96
            ||..:.|:...:..:|.:..::   ..::::||||.|.:.:|.||.|.....::.|:|.:|.|..
 Worm   148 HIRSIQRVILRNNQIKSIGVHVFRYMPTLKMLDLSGNNMTRLVTSDFTSAVSLRELILRENKIEL 212

  Fly    97 VEVGTFEPLTSLQEIDLSNNGLTTIPLELFQLPRLRNLYIDSNELTSLNLQALEKPIRAPLEYLN 161
            :|..|.||:..|:.:|||.|.|:.:.||..|  ..|:|:                          
 Worm   213 IETDTTEPMQQLETLDLSGNLLSEVRLEAQQ--NFRHLF-------------------------- 249

  Fly   162 VAGCELQELPDLGILPKLWQLNASMNPLQNFRIDSLANMCHLQVIDLTKSQLSQCGCQQVTNHLM 226
                               .||.|.||||..|..      .||:.||...||..|....|.    
 Worm   250 -------------------SLNLSCNPLQIIREG------FLQLPDLQVLQLDNCNISVVE---- 285

  Fly   227 MLGASPKFVPV-CLEALDIRECPLPYNRTIHSP 258
             .||   ||.: .|.::||::.|   |....||
 Worm   286 -AGA---FVSLPRLHSMDIKDNP---NLAYFSP 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LapsynNP_611561.1 leucine-rich repeat 39..59 CDD:275380 2/22 (9%)
LRR_8 58..118 CDD:290566 22/59 (37%)
leucine-rich repeat 60..83 CDD:275380 9/22 (41%)
leucine-rich repeat 84..107 CDD:275380 8/22 (36%)
LRR_RI <94..>249 CDD:238064 39/155 (25%)
LRR_8 106..167 CDD:290566 11/60 (18%)
LRR_4 106..145 CDD:289563 11/38 (29%)
leucine-rich repeat 108..130 CDD:275380 9/21 (43%)
leucine-rich repeat 131..154 CDD:275380 2/22 (9%)
leucine-rich repeat 157..178 CDD:275380 0/20 (0%)
leucine-rich repeat 179..202 CDD:275380 8/22 (36%)
iglr-1NP_510491.2 LRR <104..325 CDD:227223 59/228 (26%)
leucine-rich repeat 106..128 CDD:275380
leucine-rich repeat 129..151 CDD:275380 2/2 (100%)
leucine-rich repeat 152..175 CDD:275380 2/22 (9%)
leucine-rich repeat 176..199 CDD:275380 9/22 (41%)
leucine-rich repeat 200..223 CDD:275380 8/22 (36%)
leucine-rich repeat 224..247 CDD:275380 9/24 (38%)
leucine-rich repeat 248..270 CDD:275380 11/72 (15%)
leucine-rich repeat 271..294 CDD:275380 9/30 (30%)
leucine-rich repeat 295..316 CDD:275380 7/20 (35%)
leucine-rich repeat 320..343 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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