DRSC/TRiP Functional Genomics Resources

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Protein Alignment tud and vret

DIOPT Version :10

Sequence 1:NP_476773.1 Gene:tud / 37417 FlyBaseID:FBgn0003891 Length:2515 Species:Drosophila melanogaster
Sequence 2:NP_651092.1 Gene:vret / 42695 FlyBaseID:FBgn0263143 Length:691 Species:Drosophila melanogaster


Alignment Length:542 Identity:109/542 - (20%)
Similarity:199/542 - (36%) Gaps:173/542 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1820 ALELIELYLRKKDTLKP--LEGFEKG----LIVAALFEDDELWYRAQLQKELPDSRYEVLFIDYG 1878
            |||..::|..|.:|..|  :..|..|    |...|:.|:|      :.:..|.|.          
  Fly   211 ALERHDIYKLKDETRIPQVVLHFRSGRTIPLSTVAVTEED------KTKSLLEDG---------- 259

  Fly  1879 NTSTTSKCLMLSE------EIASLPSLSKKCSLQLPDAYISWSPEAEAKFAELTGEGELVFTTQL 1937
                .|||::...      ::..:|..:..|...:.:.:           .:..|:||::     
  Fly   260 ----VSKCVVCQNWTDTFCKLCKMPFCNASCFADVAEQH-----------KQACGKGEIL----- 304

  Fly  1938 LKPGQDHVTIDLLLDGENIIDRLLPLCQRKEPKEASKESLAVTTKAIITHVENTSRIYLQFSE-- 2000
                             |:.:::    .||.||.....|   .:|..||..|.|:.:|::.::  
  Fly   305 -----------------NLDEKV----GRKYPKPGLPPS---GSKVRITAFEQTNVVYVRSADIQ 345

  Fly  2001 -----KDSLMDIICEKLNGSKLQPKTEKAAVDDMC--VVQFADDLEFYRSRILEVLEDDQYKVIL 2058
                 ...|.:::....:.||||.       ..:|  :|.:..:....|:.:|.|....:..|:.
  Fly   346 IDIAYYTVLTEVMMLGKDASKLQS-------TPVCGQIVLYKFEGHMSRAMVLNVDNIKEIYVVF 403

  Fly  2059 IDYGN--TTVVDKLYE-------------------LPQEFTLIKP-VAEIC-SMEPSAIFEKNKA 2100
            ||:|:  .|.:::|||                   :|:.|  :.| :.|:. .::.|.:|     
  Fly   404 IDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVPRRF--VGPNIREVMYELDQSLVF----- 461

  Fly  2101 LTLTTFDALLDSCKG---VVAVEF-VNKS-----------ASPPVVRLTTKDKRSLKIYEHLQKL 2150
             .:.......|:.||   ||..|. :|:|           ..|.|..|..|:.....|..|..| 
  Fly   462 -NIKYSSREYDTSKGMQVVVMTEIDINRSLNRLFKTILTPVEPSVSDLGYKEDCLPYIPLHCGK- 524

  Fly  2151 VQAELKLIQKRNENSECIISYGNSPKSFYVQMKHNSADLDL---IVKTLQSLKK--EKLKKLIDP 2210
               .:.::...|...:|...|..|              :||   :.|..:.:::  ||:.|....
  Fly   525 ---NINVVVMDNTFIQCGFIYCTS--------------IDLAYEVTKMQRDIQEYGEKIAKCATY 572

  Fly  2211 TTNSNGVCYSQEDACYYR-CSIKSVLD--PSQGFEVFLLDYGNTLVVP-EVWQL----PQEIEPI 2267
            ....|.:|.::.:..:.| .|::.|.|  ||    :..:||||  :|| .|..:    ||.|.||
  Fly   573 APPINELCIAKYEGKWRRGLSVELVGDGYPS----ILFIDYGN--IVPTHVTDIRPYPPQFIFPI 631

  Fly  2268 PSLALHCQLSKIPMDVSDEKLE 2289
            .:..|  .|..:|...:||:::
  Fly   632 MTTQL--DLIGVPEKPTDEQIK 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tudNP_476773.1 TUDOR 411..524 CDD:425754
TUDOR 595..707 CDD:425754
TUDOR 1016..1132 CDD:425754
TUDOR 1309..1425 CDD:425754
TUDOR 1620..1727 CDD:425754
TUDOR 1795..1906 CDD:425754 20/97 (21%)
TUDOR 1980..2089 CDD:425754 28/140 (20%)
TUDOR 2163..2277 CDD:425754 30/126 (24%)
TUDOR 2347..2458 CDD:425754
vretNP_651092.1 TUDOR 322..438 CDD:425754 25/125 (20%)
Tudor_vreteno-like_rpt1 371..424 CDD:410515 13/52 (25%)
TUDOR 524..640 CDD:425754 33/141 (23%)
Tudor_vreteno-like_rpt2 576..631 CDD:410516 18/60 (30%)
Blue background indicates that the domain is not in the aligned region.

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