DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tud and snd1

DIOPT Version :9

Sequence 1:NP_476773.1 Gene:tud / 37417 FlyBaseID:FBgn0003891 Length:2515 Species:Drosophila melanogaster
Sequence 2:NP_878285.3 Gene:snd1 / 324404 ZFINID:ZDB-GENE-030131-3124 Length:913 Species:Danio rerio


Alignment Length:893 Identity:167/893 - (18%)
Similarity:296/893 - (33%) Gaps:305/893 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1749 SKVPRLEYLTQGDHYTTSYVNMYIDGEDVAKKLIADGFARPLEYLASGCSCYISHVNG------- 1806
            :|.|      ||..|...|:.....||::|:.|:|:|.|....          ..:.|       
Zfish   101 NKTP------QGREYGMVYLGKDTSGENIAESLVAEGLAMVRR----------EGIRGNNPEQVR 149

  Fly  1807 ICDFFIQLERDSKALELIELYLRKKDTLKPLEGFEKGLIVAALFEDDELWYRAQLQKELPDSRYE 1871
            :||    ||..:|:                   .:||           ||........:.|.:|.
Zfish   150 LCD----LEDQAKS-------------------SKKG-----------LWSEGGGSHTIRDLKYT 180

  Fly  1872 V----LFIDYGNTSTTSKCLMLSEEIASLPSLSKKC---SLQLPDAYI----------------- 1912
            :    .|:|..:....:         |.:..:...|   :|.|||.|:                 
Zfish   181 IENPRNFVDSLHQKPVN---------AIIEHVRDGCMVRALLLPDYYLVTVMLSGIKSPTFKREA 236

  Fly  1913 --SWSPE---AEAKFAELTGEGELVFTTQLLKPGQDHVTID----------LLLDGENIIDRLLP 1962
              |.:||   |||||          ||...|......:.::          :|....||.:.|| 
Zfish   237 DGSETPEPFAAEAKF----------FTESRLLQRDVQIILESCPNQVILGTILHPNGNITELLL- 290

  Fly  1963 LCQRKEPKEASKESLAVTTKAIITHVENTSRIYLQFSEKDSLMDIICEKLNGSKLQPKTEKAAVD 2027
                       ||..|       ..|:.:..:|.|.:          |||..::...|..|..:.
Zfish   291 -----------KEGFA-------RCVDWSMAVYTQGA----------EKLRAAERSAKERKVRIW 327

  Fly  2028 DMCVVQFAD----DLEFYRSRILEVLEDD---------QYKVILID-------YGNTTVVDK--- 2069
            ...|...|:    |.:|. :::::|:..|         :||.|.:.       .|.....||   
Zfish   328 KDYVAPTANLDQKDRQFV-AKVMQVVNADAIVVKLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKR 391

  Fly  2070 ---LYELP-----QEFTLIKPVAEICSMEPSAIFEKNKALTLTTFDALLDSCKGV------VAVE 2120
               ||::|     :||...|.:.:..::....|.....|:.:........:|..|      :|..
Zfish   392 FRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCATVTIGGINIAEA 456

  Fly  2121 FVNKSASPPVVRLTTKDKRSLKIYEHLQKLVQAELKLIQ-------------------------- 2159
            .|:|..:..:......|:||    .|..:|:.||.:.|:                          
Zfish   457 LVSKGLATVIRYRQDDDQRS----SHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGETQKA 517

  Fly  2160 -------KRNENSECIISYGNSPKSFYVQMKHNSADLDLIVKTLQSLKKEKL----KKLIDPTTN 2213
                   :|...||.::.|..|.....:.|...:..:..::..::..:..:.    .::.:|   
Zfish   518 KQFFPFLQRAGRSEAVVEYVFSGSRLKLYMPKETCLITFLLAGIECPRGSRNMPGGMQVAEP--- 579

  Fly  2214 SNGVCYSQEDACYYRCSIKSVLDPSQGFEVFLLDYGNTLVVPEVWQLPQEIEPIPSLALHCQLSK 2278
                 ||:|...:.:   :.||......||..:|.....:   .|             ||.:   
Zfish   580 -----YSEEAMLFTK---ELVLQREVEVEVESMDKAGNFI---GW-------------LHIE--- 617

  Fly  2279 IPMDVSDEKLEEAFAALLEQHF---GELYEITTQPNEDETKPLIAELRINYKDFVQELVSTVTGV 2340
             .:::|...:|.   ||.:.||   ...|..|....|:..:....:|..||::..:|.|:.||..
Zfish   618 -GVNLSVALVEN---ALSKVHFTAERSSYYKTLVSAEESARQRKEKLWANYEEKPKEEVAQVTEA 678

  Fly  2341 QKPLEAELHNCVVVQFDGPMSFYVQMESDVPALEQMTDKL---LDAEQDLPAFSDLKEGALCVAQ 2402
            ::.: |:..:..|.:....:.||.|.......||.:.:.:   :.|:..:......:.|..|:|:
Zfish   679 KERV-AKYRSVYVTEITDGLHFYAQDVETGTKLENLMESMRGEIAAQPPVEGSFAPRRGEFCIAK 742

  Fly  2403 FPEDEVFYRAQIRKVLDDGKCEVHFIDFGNNAVTQQFR-------------------------QL 2442
            |.:.| :|||::.||....|..|.:||:||..|....|                         |:
Zfish   743 FADGE-WYRARVEKVESPAKVHVFYIDYGNREVLSSTRLAALPPAFSTRTLPPQATEYAFAYIQV 806

  Fly  2443 PEELAKPAR-----------YSRHCELDAS-TISKCDAALLQSFIDTR 2478
            |::  :.||           ::..|.|:.. :.|.|....|| |.||:
Zfish   807 PQD--EDARADAVDSVVRDIHNTQCLLNVEYSGSVCPQVTLQ-FADTK 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tudNP_476773.1 DUF1421 198..>397 CDD:284607
TUDOR 406..524 CDD:278965
TUDOR 454..510 CDD:197660
TUDOR 591..707 CDD:278965
TUDOR 644..693 CDD:197660
TUDOR 1012..1132 CDD:278965
TUDOR 1062..1119 CDD:197660
TUDOR 1309..1425 CDD:278965
TUDOR 1354..1411 CDD:197660
TUDOR 1614..1727 CDD:278965
TUDOR 1666..1711 CDD:119391
TUDOR 1791..1906 CDD:278965 16/128 (13%)
TUDOR 1843..1886 CDD:119391 7/46 (15%)
TUDOR 1975..2089 CDD:278965 28/144 (19%)
TUDOR 2028..2069 CDD:119391 10/60 (17%)
TUDOR 2159..2277 CDD:278965 18/154 (12%)
TUDOR 2210..2264 CDD:197660 10/53 (19%)
TUDOR 2345..2458 CDD:278965 31/151 (21%)
TUDOR 2396..2437 CDD:119391 17/40 (43%)
snd1NP_878285.3 SNc 18..167 CDD:214615 23/115 (20%)
SNc 26..167 CDD:238102 23/115 (20%)
SNc 194..329 CDD:214615 34/182 (19%)
SNc 202..329 CDD:238102 33/165 (20%)
SNc 342..498 CDD:214615 30/160 (19%)
SNc 351..499 CDD:238102 29/151 (19%)
SNc 528..663 CDD:214615 27/168 (16%)
SNc 536..663 CDD:238102 25/160 (16%)
TUDOR 680..802 CDD:278965 26/123 (21%)
TUDOR 732..787 CDD:197660 18/55 (33%)
SNc 749..898 CDD:214615 26/106 (25%)
SNc <847..898 CDD:294094 3/5 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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