DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tud and Tdrd6

DIOPT Version :9

Sequence 1:NP_476773.1 Gene:tud / 37417 FlyBaseID:FBgn0003891 Length:2515 Species:Drosophila melanogaster
Sequence 2:NP_001178512.1 Gene:Tdrd6 / 316254 RGDID:1305956 Length:2136 Species:Rattus norvegicus


Alignment Length:2359 Identity:462/2359 - (19%)
Similarity:792/2359 - (33%) Gaps:800/2359 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 LTVGLTYDVVISYVENGPYLFWVHLKSSD---HDLSTMMGQIERTKL------------KALAQA 455
            |.:|:|..||::.|.: |:.....|:|..   |.||..|.|:.|...            :...::
  Rat   245 LQLGVTEPVVVTQVCH-PHRIHCQLRSLSQEIHRLSESMAQVYRAPTGTEDEDSGSATWEEREES 308

  Fly   456 PEL-GTACVARFSEDGHLYRAMVCAVY-AQR-YRVVYVDYGNSELLSASDLFQIPPELLEIKPFA 517
            |:. |:.| |....||..|||::...: .|| .:|::||||..||:|.|.|..:.||...:....
  Rat   309 PDKPGSPC-ASCGLDGQWYRALLLETFRPQRCAQVLHVDYGRKELVSCSSLRYLLPEYFRMPVVT 372

  Fly   518 FRFALAGTKEI------EPIDDSMKRIFKKSAI------YRNFE----LTVQAPESVG-----SM 561
            :..||.|..:.      ..:.| :|.:....|:      |.:||    :|:...:.:.     .:
  Rat   373 YPCALYGLWDCGRGWSRSQVGD-LKALILGQAVNAKIEFYCSFEHMYYVTLYGEDGINLNSAFGV 436

  Fly   562 QTC-----HLNQNGTNML--ELLRQLKNSRQSYKKAEQLEND-----------------DAVEIR 602
            |:|     .|...|....  |...:::.:.||...||::|.:                 || ::.
  Rat   437 QSCCLADRFLQSQGIEEEEDEDEDEMEAAFQSQSPAEEMEEEVSLPSLRSIRLKMNTFYDA-QVE 500

  Fly   603 FIDSPSNFYVQKVANIGKFEQLMDEMFSYYNANQRV--------PDQLILGAPCIVKCDQE-WYR 658
            |:.|||.|:::...:...|.:|...|.|:|::..::        ||.|     |.||..:. :||
  Rat   501 FVKSPSEFWIRLRKHKNTFSKLTKRMCSFYSSASKLDGVILKPEPDDL-----CCVKWKENGYYR 560

  Fly   659 AEILRVDD-SVIVRHVDFGYEQNVKRHLIGHIAEKHLEMPRQAIKCCLKGFENSELSEDKITDQF 722
            |.:.|:|. ||.|..||.|..:||....:..:..:..::|..|:||.|             .|.:
  Rat   561 AMVTRLDSKSVDVFLVDRGNSENVDWCDVRMLLPQFRQLPILALKCTL-------------ADIW 612

  Fly   723 EMLAEESNIRRRTFSVRIFRIEPDGLNVVNLLAKNLNVMKKLYKLSMPFEQYLSLEKGQFNANNT 787
            .:        .:|:|                                  ::.:|..|        
  Rat   613 PL--------GKTWS----------------------------------QEAISFFK-------- 627

  Fly   788 RAESVISSELNKSHILNSTSIGETENRLQEQEKEQQQKKVDVRQQQLAVEIPQAVKSVSGSKNST 852
              ::|:..|| ..|||                        |.:.:|..:||              
  Rat   628 --KTVLHKEL-VVHIL------------------------DKQDRQYVIEI-------------- 651

  Fly   853 DWDKRSSTSAGSKDSKRQQQQQIQRIDRHLDFSCETQSTGSYSSGMSSPRKGNRQQNGRTPIQSP 917
                        .|..|..::.|.::              ...:|.:..::...::|.|....||
  Rat   652 ------------LDESRTGEENISKV--------------IAQAGYAKFQEFETKENIRLSAHSP 690

  Fly   918 RHNEKQEAKKNARFSNSESPRRSRDGQQGNQRSQNAPQGYAQKPQRQKSTLDGNISSKRSSGVGS 982
            .|       .:..|....|...|....:|:|:::|..:..:. |:...:....|||:.:::....
  Rat   691 GH-------VSGHFIAESSKIPSVKKVEGDQKAKNDNKTLSD-PEALATVSLSNISTGQTAQDKE 747

  Fly   983 DIASSSS---ESVAAAKPEKYVSLDKPYALQEMKTPSKEAASLSWWLSPFQFYIVPKSVSAKYDN 1044
            .:.|..:   .::...||:       .....|::..|.....:|...:|..|:......:..:..
  Rat   748 KVTSDPTLLMLNLLKTKPD-------CCGKGELEVGSTVEVKVSHIENPGSFWCQLMRNAQGFRT 805

  Fly  1045 IMRDMREFYRQKQHQPLQLKVGSTVVVRQRKDNAILRATVTACNHMMRKYRVFCVDTGSLITVTS 1109
            :|.|:.::.:.   :|...:..:...:.:|..|......:.:....:...||..||.|....|:.
  Rat   806 LMCDIEDYCKS---EPSPYEGDTRACLAKRTANGRWSRALISGAQSLEHVRVVFVDYGDKDVVSM 867

  Fly  1110 EDIWQLEQRFADPPCMAHRCSFHSVV--TNYDPLYIVDR-METFVPV-------NAKVDCEFVSK 1164
            :||..:...|......|.|||.::::  |..:|....:| ::.|...       |.::.|...: 
  Rat   868 KDILSVSDVFFKVRAQAFRCSLYNLIQPTGENPFVWDERAIQAFTGFIDNAWQNNLELKCTIFA- 931

  Fly  1165 EKSNQGSNTSSTCSYTVNIFVNGASLRDMLVKAEFLTEVAPEIRVNLLAGQQIRGKFTSIRDMTS 1229
                ..|.....|...|::.....|....||:......|  :::..|....|:...:.|..|:..
  Rat   932 ----LASRHEEECFNVVDLLTPFQSACHFLVEKRLARPV--KLQKPLEPSVQLHSYYYSTHDLKI 990

  Fly  1230 FKVQFDYGNNVN----FLCTYDDAKFVKSNPNLARRFKEFYEGKSFALNVKNVCENNIVHLRPVM 1290
            ...:..|..:.:    |.|            .|||.              .|:.|....|:..:.
  Rat   991 GSEELVYITHADDPWTFYC------------QLARN--------------TNILEQLSYHIMQLS 1029

  Fly  1291 PLFMEDRRSFICPYPVVLSSFQALVVYTAKPYRVYVQPQAIVPSMQTLLDNMYEHYKAKGDSLKK 1355
            .:.:..|.|.:.|                                                    
  Rat  1030 KVLLNLRTSTLVP---------------------------------------------------- 1042

  Fly  1356 FDVGQICAVRSSDGNWYRARISGKDSNAACFEVFYIDYGNTEEIKRDDIKALDAKFYEHASGFAV 1420
               |.:|..:.:||||||..|..|:.:    :||::|:||| .:..|.:                
  Rat  1043 ---GTLCLAKYTDGNWYRGIIIEKEPS----KVFFVDFGNT-YVASDHL---------------- 1083

  Fly  1421 EINLPIGRPSNDTKL------KARISEILEEKVVTIKSIEVRRSHLIADVILENNQSVID-LLKA 1478
               |||.|.:.|..|      |..:|:|              ..|:..:|.....::|:| .|||
  Rat  1084 ---LPIPRDAYDVLLLPMQAVKCSLSDI--------------PHHIPEEVTAWFQETVLDKSLKA 1131

  Fly  1479 EKLVPGKDLDYMRKQMEKGKSRTYEYIETVDLTLDEEEDKGRKETVSKSGSANASPKKKQHND-- 1541
              ||..||.|        |:.....|.|:|.:.....|..|      ..|..|.:.:|.:.|:  
  Rat  1132 --LVVAKDPD--------GRLIIELYDESVQINASINEKLG------LLGYKNRTRRKDKENEII 1180

  Fly  1542 -KDREPKKSKPAEPARTVAPQPVALKTPSPVPAEPAPVPKPATPVPEVVEV------PEINPTVR 1599
             ::.|..:.| ||           :..|||...    :.|........||:      |:::|..:
  Rat  1181 LRETETLQDK-AE-----------IMKPSPTDY----LGKSGDSKAHGVEIMGESCKPKLSPACK 1229

  Fly  1600 EAAAESKQAPAQEDPYKDLDCVVLSHCDNPAQFYVHPIDQLSKLNQLHENLQIVSPSLPQLMNVV 1664
            |                                    :..|....:.|    :|:|....:.|..
  Rat  1230 E------------------------------------LKYLQGSGKAH----LVTPYQDSMGNKN 1254

  Fly  1665 NGADCVSMYSVDKCWYRAKIIDAELMVLLFIDYGNTDCVSDATDIKESMW--SHIEPFCLPCALP 1727
            :|...::         |.|                          :|.|:  |.:....|..|||
  Rat  1255 DGGFLLT---------REK--------------------------REDMFASSPMSATKLESALP 1284

  Fly  1728 IRPKGTADWVDAANGIFNESYSKVPRLEYLTQGDHYTTSYVNMYIDGEDVAKKLIADGFARPLEY 1792
            .|..|.|...|     ....:.:.|                          :|.||.||.     
  Rat  1285 ERRMGEASGKD-----LPPKFCEFP--------------------------QKTIAPGFK----- 1313

  Fly  1793 LASGCSCYISHVNGICDFFIQLERDSKALELIELYLRKKD--------TLKPLEGFEKGLIVAAL 1849
                .|.|:||:|.:.||:|||..|.  .|:..|..|..|        |..|   ::.|.::.|:
  Rat  1314 ----TSVYVSHINDLSDFYIQLIEDE--TEINRLSERLNDVRTRPQYHTGPP---WQSGDVICAV 1369

  Fly  1850 FEDDELWYRAQLQKELPDSRYEVLFIDYGNTST--TSKCLMLSEEIASLPSLSKKCSLQ---LPD 1909
            |.:|.|||||.:.::..:....|.||||||.|.  |::...|....|.||:|...|||:   :||
  Rat  1370 FPEDNLWYRAVVLEQQHNDLLSVQFIDYGNMSVVHTNRTGRLGPIDAVLPALCLHCSLRGIVVPD 1434

  Fly  1910 --------AYISW-SPEAE--AKFAELTGEGELVFTTQLLKPGQDHVTIDLLLDGENIIDRL--- 1960
                    ||.|. :.||:  .:|.:..|..|::.       ..:|..|     .|:||:|.   
  Rat  1435 IVGTKEMVAYFSQRTDEAQIRCEFVKFQGTWEVIL-------ADEHGII-----AEDIINRFPFN 1487

  Fly  1961 ----LPLCQRKEPKEASKESLAVT----------------TKAIITHVENTSRIYLQFSEKDSLM 2005
                ..|..:....:.||.:|...                .||..|.::.....:.||::.:.|.
  Rat  1488 GKSQAGLTTQSMKGDCSKTALKTNMDTSVFLNWYNPKMKLIKAYATVIDGPEYFWCQFADSEKLQ 1552

  Fly  2006 DIICEKLNGSK----LQPKTEKAAVDDMCVVQFADDLEFYRSRILEVLEDDQYKVILIDYGNT-T 2065
            .:..|..|.:|    .:..|:...:.|.|:|::.:|..:||:.|..:.:|....|.|:|:||. .
  Rat  1553 YVETEVQNAAKQLADRKSCTQCPQIGDPCIVRYREDGHYYRALITNICDDHLASVRLVDFGNVED 1617

  Fly  2066 VVD--KLYELPQEFTLIKPVA------------EICSMEPSAIF---EKNKALTLTTFDALLDSC 2113
            .||  .|:.:|.|..|:...|            .:|..|.:..|   .....|.:|..:...|.|
  Rat  1618 CVDTNALWSIPSELLLVPMQAFPCCLSGFTVSGGVCPQEGNDYFYDIVTEDVLEITILEIKRDVC 1682

  Fly  2114 KGVVAV-------EFVN-------KSASPPVVRLTTK----------------DKRSLKIYEHLQ 2148
            ...:||       |.:|       |:.:|.....:.|                .|.|.||.:...
  Rat  1683 DIPLAVVELRSKGENINEKMKKYAKTGTPKSGLYSEKHGAERKGGLSSPDLGLKKPSHKIAQEKT 1747

  Fly  2149 KLVQAELKLIQKRNE---NSECIIS--YGNSPKSFYVQMKHNSADLDLIVKTLQSLKKEKLKKLI 2208
            ..::|....:.:|.|   |.|...|  |..||::.:...:|:...         .:..::|:   
  Rat  1748 FYMEARASELSERFEKDLNIETRPSKFYERSPRNIFNAFEHSCQG---------KMGSQRLE--- 1800

  Fly  2209 DPTTNSNGVCYS-----QEDACYYRCSIKSVL----DPSQGFEVFLLDYGNTLVVP--------E 2256
                  .|:.|.     :.|..|.......:|    :|.:..|:      |:|.||        |
  Rat  1801 ------GGMDYHFVDRVKYDDTYLMTGFNPILAHASEPKELLEL------NSLEVPLSPDDECKE 1853

  Fly  2257 VWQL--------------PQEI---EPIPSLALHCQ--------LSKIPMDVSDEKLEEAFAALL 2296
            ..:|              .:|:   .|:..|:..||        :.::|:|...||..|      
  Rat  1854 FLELESIDLQHSPAGEEDKEELGLGSPMAPLSPGCQAGATLEPFMVQLPLDCEAEKQLE------ 1912

  Fly  2297 EQHFGELYEITTQPN---EDETKPLIAELRINYKDFVQELVSTVTGVQKPLEAELHNCVVVQFD- 2357
                   .|:.| |.   ||...||.|.:..|..:            .:..|.|..:..|...| 
  Rat  1913 -------LELPT-PQLSLEDSISPLSATVSQNMPE------------SRSAEDERKSSCVGSSDD 1957

  Fly  2358 ------GPMSFYVQMESDVPALEQMTDKLLDAEQDLPAFSDLKEGALCVAQFPEDEVFYRAQIRK 2416
                  .|:..:.: ..|.||.::|.    .:|::.|.|.:....||....|.|:|.  |.. ||
  Rat  1958 DDDHSASPLPHHGK-GGDSPAHDEMN----LSEEEFPQFENRDSAALLAPLFSEEEA--RGG-RK 2014

  Fly  2417 VLDDGKCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKCDAALLQSFIDTRFSE 2481
                |:.||..::..|....:.|                     |..|||   ::.|.:...:| 
  Rat  2015 ----GRSEVPAVELQNTYTLKGF---------------------SVGSKC---VVWSSLRNTWS- 2050

  Fly  2482 TFQVEILATKGTGTHVVRL 2500
              :.||||....||.|:.|
  Rat  2051 --KCEILALAEEGTRVLNL 2067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tudNP_476773.1 DUF1421 198..>397 CDD:284607
TUDOR 406..524 CDD:278965 40/135 (30%)
TUDOR 454..510 CDD:197660 22/58 (38%)
TUDOR 591..707 CDD:278965 38/142 (27%)
TUDOR 644..693 CDD:197660 16/50 (32%)
TUDOR 1012..1132 CDD:278965 22/119 (18%)
TUDOR 1062..1119 CDD:197660 10/56 (18%)
TUDOR 1309..1425 CDD:278965 17/115 (15%)
TUDOR 1354..1411 CDD:197660 17/56 (30%)
TUDOR 1614..1727 CDD:278965 13/114 (11%)
TUDOR 1666..1711 CDD:119391 3/44 (7%)
TUDOR 1791..1906 CDD:278965 42/124 (34%)
TUDOR 1843..1886 CDD:119391 18/44 (41%)
TUDOR 1975..2089 CDD:278965 32/148 (22%)
TUDOR 2028..2069 CDD:119391 15/43 (35%)
TUDOR 2159..2277 CDD:278965 28/164 (17%)
TUDOR 2210..2264 CDD:197660 13/84 (15%)
TUDOR 2345..2458 CDD:278965 25/119 (21%)
TUDOR 2396..2437 CDD:119391 12/40 (30%)
Tdrd6NP_001178512.1 TUDOR 10..133 CDD:278965
TUDOR 245..379 CDD:278965 40/135 (30%)
TUDOR 313..359 CDD:119391 19/46 (41%)
TUDOR 489..610 CDD:278965 36/139 (26%)
TUDOR 547..591 CDD:119391 17/48 (35%)
TUDOR 775..891 CDD:278965 22/118 (19%)
TUDOR 827..870 CDD:119391 8/42 (19%)
TUDOR 988..1107 CDD:278965 36/223 (16%)
TUDOR 1043..1085 CDD:119391 17/65 (26%)
TUDOR 1310..1429 CDD:278965 45/132 (34%)
TUDOR 1363..1407 CDD:119391 18/43 (42%)
TUDOR 1523..1645 CDD:278965 30/121 (25%)
TUDOR 1578..>1616 CDD:119391 13/37 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343394
Domainoid 1 1.000 65 1.000 Domainoid score I9851
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 140 1.000 Inparanoid score I4413
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232447at33208
OrthoFinder 1 1.000 - - FOG0002918
OrthoInspector 1 1.000 - - otm45887
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22948
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4998
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.900

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