DRSC/TRiP Functional Genomics Resources

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Protein Alignment tud and Tdrkh

DIOPT Version :10

Sequence 1:NP_476773.1 Gene:tud / 37417 FlyBaseID:FBgn0003891 Length:2515 Species:Drosophila melanogaster
Sequence 2:NP_001014060.2 Gene:Tdrkh / 310652 RGDID:1311196 Length:560 Species:Rattus norvegicus


Alignment Length:550 Identity:125/550 - (22%)
Similarity:202/550 - (36%) Gaps:146/550 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1395 NTEEIKRDDIKALDAKFYEHASGFAVEINLPIGRPSNDTKLKARISEILEEKVVTIKSIEV-RRS 1458
            :||::..:.:..:        |||.|::          .|.||.|.:||.|.....:.:.| :||
  Rat    89 DTEDVGDERVLLI--------SGFPVQV----------CKAKAAIHQILTENTPVFEQLSVPQRS 135

  Fly  1459 HLIADVILENNQSVIDLLKAEKLVPGKDLDYMRKQMEKGKSRTYEYIETVDLTLDEEEDKGRKET 1523
              :..:|....:::..:.||.    |..:     ..:|....|......:.::..::|....|..
  Rat   136 --VGRIIGRGGETIRSICKAS----GAKI-----TCDKESEGTLLLSRLIKISGTQKEVAAAKHL 189

  Fly  1524 VSKSGSANASPKKK-QHNDKDREPKKSKPAEPARTVAPQP-----VAL--KTPSPV-PAEPAPVP 1579
            :.:..|.:...:|: .|:.:.|.|:| :|....|....:|     .||  .|.|.: ||.|..||
  Rat   190 ILEKVSEDEELRKRIAHSAETRVPRK-QPISVRREEVTEPGGAGEAALWKNTNSSMGPAAPLEVP 253

  Fly  1580 KPATPVPEVV--------EVPEINPTVREAAAESKQAPAQEDPYKDLDCVVLSHCDNPAQFYV-- 1634
            ........||        |.|..:......|..|.:....|.|..|..    .|.|...:.||  
  Rat   254 LRKGGGDMVVVGPKEGSWEKPNDDSFQNSGAQSSPETSMFEIPSPDFS----FHADEYLEVYVSA 314

  Fly  1635 --HP--------------IDQL-SKLNQLHENLQIVSPSLPQLMNVVNGADCVSMYSVDKCWYRA 1682
              ||              :|:| |::.|.:||      |||:.:.|..|....:..|.:..||||
  Rat   315 SEHPNHFWIQIIGSRSLQLDKLVSEMTQHYEN------SLPEDLTVHVGDIVAAPLSTNGSWYRA 373

  Fly  1683 KI---IDAELMVLLFIDYG-NTDC-VSDATDIKESMWSHIEPF-CLPCALP-IRPKGTADWVDAA 1740
            ::   ::...:.|.|:|:| |.|| :.|...::....|  .|| .:.|:|. |.|.| .:|.:  
  Rat   374 RVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLS--LPFQAIECSLARIAPSG-EEWEE-- 433

  Fly  1741 NGIFNESYSKVPRLEYLTQGDHYTTSYVNMYIDGEDVAKKLIADGFARPLEYLASGCSCY----- 1800
                 |:..:..||.:....                  |.|:    |:...|:.:|.|.:     
  Rat   434 -----EALDEFDRLTHCADW------------------KPLV----AKISSYVQTGISTWPKVYL 471

  Fly  1801 ISHVNG-ICDFFIQLERDSKALELIELYLRKK---DTLKPLEGFEKGLIVAALFEDDELWYRAQL 1861
            ....|| ..|..::|.|...|:||.|.....:   |.||.:          |...||.|   |.:
  Rat   472 YDTSNGKKLDIGLELVRKGYAVELPEDMEENRTVPDMLKDM----------ATETDDSL---ASI 523

  Fly  1862 QKELPDSRYEVLFIDYGNTSTTSKCLMLSE 1891
            ..|...|..|:        ..|..||.|||
  Rat   524 LTETKKSPEEI--------PHTLSCLSLSE 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tudNP_476773.1 TUDOR 411..524 CDD:425754
TUDOR 595..707 CDD:425754
TUDOR 1016..1132 CDD:425754
TUDOR 1309..1425 CDD:425754 6/29 (21%)
TUDOR 1620..1727 CDD:425754 34/131 (26%)
TUDOR 1795..1906 CDD:425754 27/105 (26%)
TUDOR 1980..2089 CDD:425754
TUDOR 2163..2277 CDD:425754
TUDOR 2347..2458 CDD:425754
TdrkhNP_001014060.2 KH-I_TDRKH_rpt1 49..119 CDD:411856 10/47 (21%)
KH-I_TDRKH_rpt2 124..205 CDD:411857 13/91 (14%)
Tudor_TDRD2 328..420 CDD:410483 27/99 (27%)
Blue background indicates that the domain is not in the aligned region.

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