DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tud and Tdrd1

DIOPT Version :9

Sequence 1:NP_476773.1 Gene:tud / 37417 FlyBaseID:FBgn0003891 Length:2515 Species:Drosophila melanogaster
Sequence 2:XP_038959137.1 Gene:Tdrd1 / 292129 RGDID:1306140 Length:1174 Species:Rattus norvegicus


Alignment Length:1484 Identity:288/1484 - (19%)
Similarity:473/1484 - (31%) Gaps:533/1484 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   911 RTPIQSPRHNEKQEAKKNARFSNSESPRRSRDGQQGNQRS------QNAPQGYAQKPQRQKSTLD 969
            |:|:  |:||.     .|.|..:.|:         ||:::      ||        .|...|..|
  Rat    34 RSPV--PQHNH-----PNFRLKSPEN---------GNKKNNFLLCEQN--------KQYLASQED 74

  Fly   970 GNISSKRSSGVGSDIASSSSESVAAAKPEKYVSLDKPYALQEMKT-PSKEAASLSWW-LSPFQFY 1032
            .::.|...:|:..::..|..                     :.|| |:....|||.. .||    
  Rat    75 NSVVSSNPAGINGEVGGSKG---------------------DRKTLPTGNPVSLSLGNNSP---- 114

  Fly  1033 IVPKSVSAKYDNIMRDMREFYRQKQHQPLQ--LKVGSTVVVRQRKDNAI---LRATV-------- 1084
              |..|..|..|.:...:.   :|.|:..:  |.|.:..:.     |::   ||:|.        
  Rat   115 --PNQVKTKPSNAVTPEKS---KKSHKLFENALSVNNPALF-----NSLGPPLRSTTCHRCGLFG 169

  Fly  1085 -TACNHMMRKYRVFCVDTGSLITVTSEDIWQLEQRFADPPCMAHRCSFHSVVTNYDPLYIVDRME 1148
             ..|:...:.|  :|      .|......|......    |...:.|.|.:..|..|.    ..:
  Rat   170 SLRCSQCKQTY--YC------STACQRRDWSSHSTI----CRPVQQSLHKLEDNKSPF----ETK 218

  Fly  1149 TFVPVNAKVDCEF-VSKEKSNQGSNTSSTCSYTVNIFVNGASLRDMLVKAEFLTEVAPEIRVNLL 1212
            |....|.:|.|.. |:||.:.....            |..:.||.:                .|.
  Rat   219 TIDVKNEQVACPLGVTKEMTAGAER------------VMFSDLRSL----------------QLR 255

  Fly  1213 AGQQIRGKFTSIRDMTSFKVQFDYGNNVNFLCTYDDAKFVKSNPNLARRFKEFYEGKSFALNVKN 1277
            ...:|:|..|..:....|.||. |.:.|           ::....|:...||.|.          
  Rat   256 KSMEIKGTVTEFKHPGHFYVQL-YSSEV-----------LEYMNQLSASLKETYA---------- 298

  Fly  1278 VCENNIVHLRPVMPLFMEDRRSFICPYPVVLSSFQALVVYTAKPYRVYVQPQAIVPSMQTLLDNM 1342
                |:|.....:|:                                                  
  Rat   299 ----NMVPEDGYLPV-------------------------------------------------- 309

  Fly  1343 YEHYKAKGDSLKKFDVGQICAVR-SSDGNWYRARISGKDSNAACFEVFYIDYGNTEEIKRDDIKA 1406
                           .|::|..: :.|..|.||.:.|.|.......|.||||||.|.|..|.|..
  Rat   310 ---------------KGEVCVAKYTVDQTWNRAVVEGVDVLQKKAHVLYIDYGNEEIIPVDRIHQ 359

  Fly  1407 LDAKFYEHASGFAVEINLPIGRPSNDTKLKARISEIL-------EEKVVTIKSIEVRRSHLIADV 1464
            |..             ::.:..||   .:|..:|.::       |:.||.:|::           
  Rat   360 LSR-------------SISLFPPS---AIKCYVSGVVPAAGEWTEDCVVAVKAL----------- 397

  Fly  1465 ILENNQS--VIDLLKAEKLV---------PGKDLDYMRKQMEKGKSRTYEYIETVDLTLDEEEDK 1518
            :.|...|  |:|:.:.|.|.         .||.||::..:|..|              :..:|..
  Rat   398 LFEQYCSIKVVDISEEEGLTCAVDVVLQSSGKQLDHVLVEMGYG--------------VKPDEPS 448

  Fly  1519 GRKETVSKSGSANASPKKKQHNDKDREPKKSKPAEPARTVAPQPVALKTPSPVPAEPAPVPKPAT 1583
            .:|:::                    :|..|:  :..|..|...:..:..:.||.          
  Rat   449 SKKQSM--------------------DPGTSE--DTGRLTAENRIGAERNALVPT---------- 481

  Fly  1584 PVPEVVEVPEINPTVREAAAESKQAPAQEDPYKDLDCVVLSHCDNPAQFYVHPIDQLSKLNQLHE 1648
                   |..:|                   ..|..|.|::|...|..|:...:....||.:|.|
  Rat   482 -------VLTLN-------------------VGDEFCGVVAHIQTPEDFFCQQLQSGHKLAELQE 520

  Fly  1649 NL----QIVSPS---LPQLMNVVNGADCVSMYSVDKCWYRAKII---DAELMVLLFIDYGNTDCV 1703
            :|    ..|:|.   .|.:     |..|.:.:|.|..||||.::   ..|.:::.::||||.:.:
  Rat   521 SLSEYCSHVTPRSDFYPTI-----GDMCCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEIL 580

  Fly  1704 SDATDIKESMWSHIEPFC-------------LPCALP-IRPKGTADWVDAANGIFNESYSKVPRL 1754
            |            ::..|             |.|.|. ::| ....|...|..:..::       
  Rat   581 S------------LKRLCPIIPKLLDLPMQALNCVLAGVKP-SLGMWTPEAICVMRKA------- 625

  Fly  1755 EYLTQGDHYTTSYVNM--------YIDGE-----DVAKKLIADGFARPLEYLAS--GCSCYISH- 1803
               .|....|...|.|        .:|..     ..:|.|:..|||...:.:.:  |.|...|: 
  Rat   626 ---VQNRMVTVRVVGMQGTRALVELVDKSVAPHLSASKALLDSGFAIEEKDIVADKGSSARASNV 687

  Fly  1804 ---VNG---------------------IC------DFFIQLERDSKALELIELYLRKKD--TLKP 1836
               |.|                     :|      :|:....:|....:|.:|.....|  ..||
  Rat   688 PLAVEGAVEVLEWTWVEFTVDETVDVMVCMMHSPGEFYCHCLKDDALKKLDDLNKSLADYCAQKP 752

  Fly  1837 LEGF--EKGLIVAALFEDDELWYRAQLQKELPDSRYEVLFIDYGNTS--TTSKCLMLSEEIASLP 1897
            ..||  |.|....|.|..|..||||.:::.||....:|.|:||||..  ||.:...::.:...||
  Rat   753 PNGFKAEVGRPCCACFAGDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLHAIAPQFLLLP 817

  Fly  1898 SLSKKCSL-QLPDAYISWSPEAEAKF-------------AELTGEGELVFTTQLLKPGQDHVTID 1948
            ....:|.| .:......|:.||.|:|             .|:|..|..|..|.|..| ...:..|
  Rat   818 FQGMQCWLVDIQPKNKHWTKEATARFQACVVGLKLQARVVEITENGVGVELTDLSTP-YPKIISD 881

  Fly  1949 LLLDGENII--------DRLL------------PLCQRKEPKEASKE-SLAV--TTKAIITHVEN 1990
            :|:. |:::        |.|:            ...|...|.|..|. .|.|  |..|.:..:.:
  Rat   882 VLIT-EHLVLRCGSPQKDELMSRPANKHNQIDSQSVQASPPAEQWKTIELPVNKTVPANVLEIIS 945

  Fly  1991 TSRIYLQFSEKDSLMDIIC-------EKLNGSKLQPKTEKAAVDDMCVVQFADDLEFYRSRILEV 2048
            .:..|...||.....:.:|       |..|..|.|| ..:....:.|..::.:|..:||:.:||.
  Rat   946 PTLFYAIPSEMPENQEKLCVLTAELLEHCNAQKGQP-PYRPRTGEACCAKYTNDDFWYRAIVLEA 1009

  Fly  2049 LEDDQYKVILIDYGNTTVVDKLYELPQEFTLIKPVAEICSMEPSAIFEKNKALTLTTFDALLDSC 2113
             .|...||:..||||   |::|     .|:.::|:.......|              |..:..|.
  Rat  1010 -SDSDVKVLYADYGN---VERL-----PFSRVQPITASHLQLP--------------FRIIRCSL 1051

  Fly  2114 KGVVAVEFVNKSASPPVVRLTTKDKRSLKIYEHLQKLVQAELK-----LIQKRNENS-------- 2165
            :|:..   :|.|:|.||:.|.    |:..:.:.:...|:|..|     .::|.:||.        
  Rat  1052 EGLTE---LNGSSSQPVMELL----RNAMLNQSVALSVKAVSKNVHAVSVEKCSENGMINIAENL 1109

  Fly  2166 -ECIISYGNSPKSFYVQMKHNSADLDLIVKTLQ-SLKKEK--LKKLIDPTTNSN 2215
             .|.::...|.|......|......|.....|| .::|.:  |..|::..||.|
  Rat  1110 VMCGLAENLSSKRESASTKETPHSTDCCCTELQKQIEKHEQILLFLLNNPTNQN 1163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tudNP_476773.1 DUF1421 198..>397 CDD:284607
TUDOR 406..524 CDD:278965
TUDOR 454..510 CDD:197660
TUDOR 591..707 CDD:278965
TUDOR 644..693 CDD:197660
TUDOR 1012..1132 CDD:278965 27/135 (20%)
TUDOR 1062..1119 CDD:197660 11/70 (16%)
TUDOR 1309..1425 CDD:278965 20/116 (17%)
TUDOR 1354..1411 CDD:197660 20/57 (35%)
TUDOR 1614..1727 CDD:278965 31/135 (23%)
TUDOR 1666..1711 CDD:119391 14/47 (30%)
TUDOR 1791..1906 CDD:278965 38/154 (25%)
TUDOR 1843..1886 CDD:119391 18/44 (41%)
TUDOR 1975..2089 CDD:278965 30/123 (24%)
TUDOR 2028..2069 CDD:119391 14/40 (35%)
TUDOR 2159..2277 CDD:278965 16/69 (23%)
TUDOR 2210..2264 CDD:197660 3/6 (50%)
TUDOR 2345..2458 CDD:278965
TUDOR 2396..2437 CDD:119391
Tdrd1XP_038959137.1 zf-MYND 162..198 CDD:396356 5/47 (11%)
Tudor_TDRD1_rpt1 262..391 CDD:410479 39/235 (17%)
Tudor_TDRD1_rpt2 512..593 CDD:410480 23/97 (24%)
TUDOR 709..825 CDD:395449 32/115 (28%)
Tudor_SF 938..1053 CDD:413384 30/138 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I11859
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45887
orthoMCL 1 0.900 - - OOG6_107416
Panther 1 1.100 - - O PTHR22948
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.810

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