DRSC/TRiP Functional Genomics Resources

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Protein Alignment tud and rsd-6

DIOPT Version :9

Sequence 1:NP_476773.1 Gene:tud / 37417 FlyBaseID:FBgn0003891 Length:2515 Species:Drosophila melanogaster
Sequence 2:NP_492269.2 Gene:rsd-6 / 172621 WormBaseID:WBGene00004684 Length:689 Species:Caenorhabditis elegans


Alignment Length:688 Identity:134/688 - (19%)
Similarity:238/688 - (34%) Gaps:174/688 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   798 NKSHILNSTSIGETENRLQEQEKEQQQKKVDVRQQQLAVEIPQAVKSVSG----SKNSTDWDKRS 858
            |::..||..:  ....:|.|...:::..|...|..:....:|...::.||    :.|.|...::|
 Worm    68 NRNWRLNQNN--HAFQQLAESISDKKSGKGGKRSARGGSNLPSFNRARSGGIPRNHNQTHGFRQS 130

  Fly   859 STS--------AGSKDSKRQQQQQIQRIDRHLDFSCETQSTGSYSSGMSSPRKGNRQQNGRTPIQ 915
            :.:        ||:..|..:....|.:.:...|:|   :.||.:.....:....|...|.|...|
 Worm   131 APAHRGHHRPPAGNHGSSFRPNLNISQPNPSNDYS---KMTGLHYPVSRNVLASNNGSNSRFSNQ 192

  Fly   916 SPR---HNEKQEAKKNARFSNSESPRR------------SRDGQQGNQRSQNAPQGYAQKPQRQK 965
            .||   |:||...:...|   ..||||            ||||..|::.|..    |: .|:|.:
 Worm   193 PPRREDHHEKMIMRTPYR---DPSPRRGNNYGDIRGRPDSRDGYNGDRDSTR----YS-SPRRNE 249

  Fly   966 STLDGNISSKRSSGVGSDIASSSSESVAAAKPEKYVSLDKPYALQEMKTPSKEAASLSWWLSPFQ 1030
            .  .|..|| |.|.: ||.:..||::.|.:..|:   ..:|.|      .|.:.|.|:...:...
 Worm   250 Q--PGRPSS-RGSNI-SDYSQFSSDTNAESNTER---RSRPDA------SSPDLADLARRFNSSS 301

  Fly  1031 FYIVPKSVS--AKYDNIMRDMREFYR---QKQHQPLQLKVGSTVVVRQRKDNAILRATVTACNHM 1090
            ..:.|:.:.  |..|.:.:.:.:..|   :|.::..:|.:.:.....:|| |.||   :...|..
 Worm   302 INVQPQPLESVASSDVLSKKIAKAVRKIMKKLNEGEKLSLENLFDEIERK-NKIL---IPGKNGK 362

  Fly  1091 --------MRKYRVFCVDTGSLITVTSEDIWQLEQRFADPPCMAHRCSFHSVVTNYDPLYIVDRM 1147
                    ::|.....:...::.|.|.:..|.......|.|       .|..:.:....|:||.:
 Worm   363 EKEDFLKDLKKIMPKLLSALTIDTETGDLTWNEAAVTTDSP-------IHEYMEDDLHYYVVDYV 420

  Fly  1148 ETFVPVNAKVDCEFVSKEKSN-QGSNTSSTCSYTVNIFVNGASLRDMLVKAEFLTEVAPEIRVNL 1211
            :.......:|..|  ::..|| .|.....||              :.|....|:|          
 Worm   421 KMLDKARFRVTDE--AERLSNATGVRMERTC--------------EKLTYVLFIT---------- 459

  Fly  1212 LAGQQIRGKFTSIRDMTSFKVQFDYGN-------NVNFLCTYDDAKFVKSNPNLARRFKEFYEGK 1269
                              |:.::.|.:       .::.:.|..||             .|||: .
 Worm   460 ------------------FEGEYRYASGSKTEVLKISKITTVGDA-------------PEFYQ-T 492

  Fly  1270 SFALNV-KNVCENNIVHLRPVMPLFMEDRRSFICPYPVVLSSFQALVVYTAKPYRVYVQPQAIVP 1333
            ||...: :||..|.:|....|                    .:|.:..:..:| ..|::|..  .
 Worm   493 SFEHKIFENVPANALVKCGIV--------------------RYQNVQKFAVRP-EEYIKPYE--K 534

  Fly  1334 SMQTLLDNMYEHYKAKGDSLKKFDVGQICAVRSSDG----NWYRARISGKDSNAACFEVFYIDYG 1394
            ..|.:.|.|.:....|....:.:.....|.|:.:|.    .|.||.|. |......| :|.:|.|
 Worm   535 MNQEIQDFMSQIRNEKSVPFEMWRPNHACLVQLNDSTTILKWSRAMII-KIETQLIF-LFILDSG 597

  Fly  1395 NTEEIKRDDIKALDAKFYEHASGFAVEINLPIGRPSND 1432
            ..:.:...|::.:..||.: ...||:...|.......|
 Worm   598 FRKVVPSSDLRLMPQKFAK-LPPFAIPCTLDESEDDKD 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tudNP_476773.1 DUF1421 198..>397 CDD:284607
TUDOR 406..524 CDD:278965
TUDOR 454..510 CDD:197660
TUDOR 591..707 CDD:278965
TUDOR 644..693 CDD:197660
TUDOR 1012..1132 CDD:278965 21/132 (16%)
TUDOR 1062..1119 CDD:197660 11/64 (17%)
TUDOR 1309..1425 CDD:278965 25/119 (21%)
TUDOR 1354..1411 CDD:197660 13/60 (22%)
TUDOR 1614..1727 CDD:278965
TUDOR 1666..1711 CDD:119391
TUDOR 1791..1906 CDD:278965
TUDOR 1843..1886 CDD:119391
TUDOR 1975..2089 CDD:278965
TUDOR 2028..2069 CDD:119391
TUDOR 2159..2277 CDD:278965
TUDOR 2210..2264 CDD:197660
TUDOR 2345..2458 CDD:278965
TUDOR 2396..2437 CDD:119391
rsd-6NP_492269.2 PHA03307 82..>319 CDD:223039 60/260 (23%)
TUDOR 520..626 CDD:366171 24/111 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002918
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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