DRSC/TRiP Functional Genomics Resources

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Protein Alignment Xpd and AT1G09995

DIOPT Version :9

Sequence 1:NP_726036.2 Gene:Xpd / 37414 FlyBaseID:FBgn0261850 Length:769 Species:Drosophila melanogaster
Sequence 2:NP_001321832.1 Gene:AT1G09995 / 837534 AraportID:AT1G09995 Length:88 Species:Arabidopsis thaliana


Alignment Length:72 Identity:17/72 - (23%)
Similarity:26/72 - (36%) Gaps:16/72 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 DEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQ 298
            |.::.||..|:|....||::                |...:.||.:...|.|....|.|..|...
plant    12 DSSNQIDERCLDLQKKKISQ----------------VSKKKLEDIHCSIESYLGRFQNLLRAGNM 60

  Fly   299 RDTDMIL 305
            |...::|
plant    61 RYIQIML 67

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XpdNP_726036.2 rad3 7..717 CDD:273169 17/72 (24%)
DEXDc2 8..280 CDD:214693 10/45 (22%)
HBB 270..413 CDD:284245 10/36 (28%)
HELICc2 542..686 CDD:214694
AT1G09995NP_001321832.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1199
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D186062at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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