Sequence 1: | NP_726036.2 | Gene: | Xpd / 37414 | FlyBaseID: | FBgn0261850 | Length: | 769 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001178786.1 | Gene: | Rtel1 / 362288 | RGDID: | 1306721 | Length: | 1274 | Species: | Rattus norvegicus |
Alignment Length: | 819 | Identity: | 210/819 - (25%) |
---|---|---|---|
Similarity: | 349/819 - (42%) | Gaps: | 164/819 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 KLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEH--- 63
Fly 64 -------PETVR------------------------------KLIYCSRTVPEIEKVIAELQNLM 91
Fly 92 VYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQ 156
Fly 157 YFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVV 221
Fly 222 SKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEY- 285
Fly 286 -----QRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLR 345
Fly 346 VHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLR------TLEISDLTEYGALTLITHFA 404
Fly 405 TLVSTYTKGFTIIIEP----------FDDKTPTVS---NPILHFSCLDSSIAMAPVFSR-FQTVV 455
Fly 456 ITSGTLSPMDMYPKILDFDPVVMSSFTMTLARP---CL-LPMIVSK----------GNDQVTISS 506
Fly 507 KFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIET 571
Fly 572 QDNAETSYALMNYVK--ACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR--I 632
Fly 633 LKAR-LDYLRDQFQI-----RENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRS 691
Fly 692 RLPKWIQEHL--VDSFCNLSTEEAVQLARRWLRRMAQPF 728 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Xpd | NP_726036.2 | rad3 | 7..717 | CDD:273169 | 205/801 (26%) |
DEXDc2 | 8..280 | CDD:214693 | 87/311 (28%) | ||
HBB | 270..413 | CDD:284245 | 22/154 (14%) | ||
HELICc2 | 542..686 | CDD:214694 | 48/153 (31%) | ||
Rtel1 | NP_001178786.1 | rad3 | 10..743 | CDD:273169 | 205/804 (25%) |
P-loop_NTPase | 15..>86 | CDD:304359 | 22/72 (31%) | ||
DEAD_2 | 111..272 | CDD:284209 | 56/183 (31%) | ||
Nuclear localization signal. /evidence=ECO:0000255|HAMAP-Rule:MF_03065 | 151..167 | 2/15 (13%) | |||
DEAH box | 250..253 | 2/2 (100%) | |||
Helicase_C_2 | 545..731 | CDD:290046 | 61/185 (33%) | ||
Nuclear localization signal. /evidence=ECO:0000255|HAMAP-Rule:MF_03065 | 871..877 | ||||
HN_RTEL1 | 877..976 | CDD:259826 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 982..1002 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1014..1038 | ||||
HN_RTEL1 | 1035..1137 | CDD:259826 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1143..1198 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1199 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D141017at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |