DRSC/TRiP Functional Genomics Resources

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Protein Alignment Xpd and Rtel1

DIOPT Version :9

Sequence 1:NP_726036.2 Gene:Xpd / 37414 FlyBaseID:FBgn0261850 Length:769 Species:Drosophila melanogaster
Sequence 2:NP_001178786.1 Gene:Rtel1 / 362288 RGDID:1306721 Length:1274 Species:Rattus norvegicus


Alignment Length:819 Identity:210/819 - (25%)
Similarity:349/819 - (42%) Gaps:164/819 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 KLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEH--- 63
            ::.::|:.|.||:: .||.|..||.::...|..|.:.:||.|:|||||..||...:|:. ||   
  Rat     3 RVVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWR-EHLRD 65

  Fly    64 -------PETVR------------------------------KLIYCSRTVPEIEKVIAELQNLM 91
                   .|.|:                              |:||.|||..::.:||.||:|..
  Rat    66 AVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGELRNTS 130

  Fly    92 VYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQ 156
             |..:.|         ||.||:.:||||||.|:.........|....||            ..|.
  Rat   131 -YRPKVC---------VLGSREQLCIHPEVKKQESNHMQISLCRKKVAS------------RSCH 173

  Fly   157 YFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVV 221
            ::.....:..|..|...:..|:||.:.|.....|||:|:|.....|.|:...|:||||.|..:..
  Rat   174 FYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAH 238

  Fly   222 SKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEY- 285
            :.:: :.:.|:||||||::.:|.:|.|..:..|.|......:|.:  |.:..|......|.:|: 
  Rat   239 NIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQV--LEEQARVAQHGELQQEFI 300

  Fly   286 -----QRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLR 345
                 ..:...|:|.:..:   |||.:  |...:....:||:.|......|::.......:...:
  Rat   301 IDTSSSGLNMELEDIAKLK---MILLH--LEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQ 360

  Fly   346 VHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLR------TLEISDLTEYGALTLITHFA 404
            ....:.||....::.::.:..:.......  ::|..:::      .||.|..::.|..:  :|| 
  Rat   361 TKGCILESLDQIIQHLTGRTGVFTNTAGL--QKLMDIIQIVFSVDPLEGSPGSQVGLGS--SHF- 420

  Fly   405 TLVSTYTKGFTIIIEP----------FDDKTPTVS---NPILHFSCLDSSIAMAPVFSR-FQTVV 455
                     :.:.|.|          .|..:.|.|   ..:|.:.|...|.:|..:..: .:|::
  Rat   421 ---------YKVHIHPETSHRRAAQRSDAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLI 476

  Fly   456 ITSGTLSPMDMYPKILDFDPVVMSSFTMTLARP---CL-LPMIVSK----------GNDQVTISS 506
            :|||||:|              :|||.:.:..|   || .|.|:.|          |.|.|.:||
  Rat   477 LTSGTLAP--------------LSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSS 527

  Fly   507 KFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIET 571
            .::.|.....:.:.|:.|..:|:.||.|::.||.||..:|..:..|..||:...:...|.||:|.
  Rat   528 AYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEP 592

  Fly   572 QDNAETSYALMNYVK--ACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIPYVYTQSR--I 632
            ::....|..:..|.:  |.....||..|||.|||.|||:||....||.|::.|:||......  |
  Rat   593 RNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVI 657

  Fly   633 LKAR-LDYLRDQFQI-----RENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRS 691
            ||.: ||.::.:.::     ...::....|.|...|.:||.:|.:.|||.:...|.||:..|.|:
  Rat   658 LKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADARA 722

  Fly   692 RLPKWIQEHL--VDSFCNLSTEEAVQLARRWLRRMAQPF 728
            .||.|::.:|  .|:|            .|.:|.:||.|
  Rat   723 HLPSWVRPYLKVYDNF------------GRVIRDVAQFF 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XpdNP_726036.2 rad3 7..717 CDD:273169 205/801 (26%)
DEXDc2 8..280 CDD:214693 87/311 (28%)
HBB 270..413 CDD:284245 22/154 (14%)
HELICc2 542..686 CDD:214694 48/153 (31%)
Rtel1NP_001178786.1 rad3 10..743 CDD:273169 205/804 (25%)
P-loop_NTPase 15..>86 CDD:304359 22/72 (31%)
DEAD_2 111..272 CDD:284209 56/183 (31%)
Nuclear localization signal. /evidence=ECO:0000255|HAMAP-Rule:MF_03065 151..167 2/15 (13%)
DEAH box 250..253 2/2 (100%)
Helicase_C_2 545..731 CDD:290046 61/185 (33%)
Nuclear localization signal. /evidence=ECO:0000255|HAMAP-Rule:MF_03065 871..877
HN_RTEL1 877..976 CDD:259826
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 982..1002
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1014..1038
HN_RTEL1 1035..1137 CDD:259826
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1143..1198
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1199
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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