DRSC/TRiP Functional Genomics Resources

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Protein Alignment Xpd and Brip1

DIOPT Version :9

Sequence 1:NP_726036.2 Gene:Xpd / 37414 FlyBaseID:FBgn0261850 Length:769 Species:Drosophila melanogaster
Sequence 2:XP_006247125.1 Gene:Brip1 / 360588 RGDID:1307659 Length:1166 Species:Rattus norvegicus


Alignment Length:997 Identity:214/997 - (21%)
Similarity:365/997 - (36%) Gaps:312/997 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAY--------- 59
            ::.|:.::||.. .||.|.|.|..:.|.|::..|||||.|:|:||:..||...:|:         
  Rat     9 TIGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSLTGKPV 72

  Fly    60 ---MVEHPETVRKLIYCS--------------------------------------RTVPE---- 79
               :.:.||....   ||                                      |..||    
  Rat    73 DEGLNKKPEAPSS---CSCSCHSKNFTYSDTNLDTSPHFSSPSKPSSERNAVSSPCRDSPERNSL 134

  Fly    80 -------------------IEKV-IAELQNLMVYYERHC-------------------PNPP--- 102
                               :||. |..|:......:|||                   |..|   
  Rat   135 AAKLSAKKHASIHEDDDFQVEKKRIRPLETTQQIRKRHCLEKDVHHLDARLASEKRVKPESPIRK 199

  Fly   103 ----------------------------------------------------------------P 103
                                                                            .
  Rat   200 TSSSFQNPDGLCSRCCCSANQGINKESANTVKKDNGDQSKRPKIYFGTRTHKQIAQITRELRKTA 264

  Fly   104 FTGL---VLSSRKNMCIHPEV-----SKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEG 160
            ::|:   :||||.:.|:||||     ..|:..:.:||| :|.:..:....|.:..:..: |:..|
  Rat   265 YSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGK-HGKSCYFYHGVHRISNQQTL-QFLHG 327

  Fly   161 FSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEM 225
            .|          ..:.|::|...||....|||:.||..|..|.|:...|:||||.:|.:.:..::
  Rat   328 IS----------KAWDIEELVSLGRKLKACPYYTARELIDSADIIFCPYNYLLDSQIRESMDIKL 382

  Fly   226 SRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQ 290
             :|..|:.||||||:....::.|..:....:..:.:.|:.|  :..:||::....|.:....::.
  Rat   383 -KEQVVILDEAHNIEECARETASYSVTEVQLRFARDELDSL--INSNIRKKSHEPLRDVCYNLIN 444

  Fly   291 GLKDAS---VQRD----------TDMIL----------ANPVLPNDVLTEVVPGNIRNADHFLSF 332
            .|:..|   |:||          .:|:|          :.|||..               |..:.
  Rat   445 WLETNSKNLVERDYESSCKIWSGNEMLLNLHRMGITAASFPVLQK---------------HLSAV 494

  Fly   333 LRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIE----------RKPLRFCAERLSSLLRTLE 387
            |::     :.::...|..:|:....:...|::|.::          ||..||..:          
  Rat   495 LQK-----EEKVTSTHGKEEAIQIPIISASTQIMLKGLFMVLDYLFRKNSRFADD---------- 544

  Fly   388 ISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKT--PTVSNP----------ILHFSCLDS 440
                          :...:..||:  :|..|..||...  |...|.          :|:|.||:.
  Rat   545 --------------YKVAIQQTYS--WTNQIAIFDKNALLPVPKNKKHSRQKIGVNVLNFWCLNP 593

  Fly   441 SIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTIS 505
            ::|.:.:..:.:|:|:|||||||:..:...|.....:.......::...:....|..|.....:.
  Rat   594 AVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFNIQLEANHVISNSQVWVGTVGSGPKGRNLC 658

  Fly   506 SKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIE 570
            :.|:..|........|.||:.|.:||..||:||..||..||.:...|...|:..:|...|.:..|
  Rat   659 ATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAE 723

  Fly   571 TQDNAETSY--ALMNYVKACDC-GR--GAVLLAVARGKVSEGVDFDHHYGRAVLMFGIPYVYTQS 630
            .|...:|.:  .|..|..|... |.  ||:|:||.|||||||:||.....|||:..|||:...:.
  Rat   724 PQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKD 788

  Fly   631 RILKARLDYLRDQFQIR----ENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKR- 690
            ..::.:..|.....::|    ...:....|.|...|.:||.:|.|.|:|.:|..|.||:.:..| 
  Rat   789 LQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPDRY 853

  Fly   691 -SRLPKWIQEHLV--DSFCNLSTEEAVQLARRWLR-----RMAQPFTREDQLGISLLTLAQLE-- 745
             |.|.||:::.:.  .:|.: :.|...:.::|..:     :..:..|:|:.   |.|.:|.||  
  Rat   854 ISGLSKWVRQQIQHHSTFAS-ALESLTEFSKRHQKVTNRSKKEEKCTKENG---STLDVACLEGS 914

  Fly   746 ----------NMEQEKLERQAQ 757
                      ...:..||.:|:
  Rat   915 TLTSVSEASHQTPENSLEEEAK 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XpdNP_726036.2 rad3 7..717 CDD:273169 203/935 (22%)
DEXDc2 8..280 CDD:214693 87/439 (20%)
HBB 270..413 CDD:284245 25/175 (14%)
HELICc2 542..686 CDD:214694 49/152 (32%)
Brip1XP_006247125.1 rad3 242..878 CDD:273169 165/697 (24%)
DEAD_2 245..412 CDD:284209 46/179 (26%)
Helicase_C_2 677..863 CDD:290046 63/185 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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