DRSC/TRiP Functional Genomics Resources

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Protein Alignment Xpd and Ddx11

DIOPT Version :9

Sequence 1:NP_726036.2 Gene:Xpd / 37414 FlyBaseID:FBgn0261850 Length:769 Species:Drosophila melanogaster
Sequence 2:XP_038940692.1 Gene:Ddx11 / 316767 RGDID:1306675 Length:906 Species:Rattus norvegicus


Alignment Length:701 Identity:168/701 - (23%)
Similarity:299/701 - (42%) Gaps:106/701 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 ETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPF---TGLV-LSSRKNMCIHPEVSKER 125
            |.:.|:.|||||..::.:.:.|:|.            .||   |.|| |.||:::|::.:|....
  Rat   222 EHITKIYYCSRTHSQLAQFVREVQK------------SPFGKETRLVSLGSRQSLCVNEDVKSLG 274

  Fly   126 EGKAVDGKCYGLTASYIRERHE---MDTETP---------ICQYFEGFSLEGKESTLPVGVYSID 178
            ....::.:|..:.    |.:|:   :..:.|         .|.::....:|.....:.:.|..::
  Rat   275 SVHLMNDRCVDMQ----RRKHKKMRIGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVKDME 335

  Fly   179 DLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVC 243
            .|...|:....|||:.:|:||..|.:||..|..||.....|.....:..: .|:.|||||:.:..
  Rat   336 QLVALGKEAQACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQ-VVIIDEAHNLIDTI 399

  Fly   244 IDSMSVKIN-RRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILAN 307
            .:..|.::| .:..:..:..|.::.:..:.::.:     |..|.:.:..|.|..|......:..|
  Rat   400 TNIHSTEVNGSQLCQAHSQLLQYMERYRKRLKAK-----NLMYIKQILYLLDKFVAVLGGNVKQN 459

  Fly   308 P---VLP---------NDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGF--- 357
            |   .||         ||.|.:....||.     |..::|::|        ..::.....||   
  Rat   460 PSTQSLPQTGSELQSINDFLFQSQVDNIN-----LFKVQRYLE--------KSMLSRKLFGFTEC 511

  Fly   358 ----LKDISSKICIERKPLRFCAERLSSLLRTLEISDLTEYGALTL--------ITHFATLVSTY 410
                |..:|..  .|.:.|....:.|.||........|.|..|:.|        |..|...::|.
  Rat   512 FGVVLPSLSDS--EENRGLGGFQQFLKSLQSGPPEDSLEEGQAVALRPASPLMHIEAFLEALTTA 574

  Fly   411 TKGFTIIIEPFDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPM-DMYPKIL--- 471
            .:...:|:    ::..:|....|.|..|:.::..|.|....:.:||..||:.|: |...::|   
  Rat   575 NQDGRVIV----NRQGSVGQSSLKFLLLNPAVHFAQVVKECRALVIAGGTMQPVSDFREQLLACS 635

  Fly   472 --DFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDG 534
              :...||..|....:....:||:|:..|.....:...::.||...::...|::|..:...||.|
  Rat   636 GVEASRVVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVVPGG 700

  Fly   535 IVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNY---VKACDCGR---- 592
            :|||..||.||..|.|.|...|::..|...|.:|.|.:..::....|..|   :.:|....    
  Rat   701 MVCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRASQVEQVLTAYSTCIASCSHSEGHLT 765

  Fly   593 GAVLLAVARGKVSEGVDFDHHYGRAVLMFGIPYVYTQSRILKARLDYLRDQFQIREND------- 650
            ||:||:|..||:|||::|....||.|:|.|:||...:|..|:.::.|| ||...|.:.       
  Rat   766 GALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMAYL-DQTIPRTHGQPPPGTV 829

  Fly   651 FLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRLPKWIQEHL 701
            .:....|:...|.:|||:|.:.|:..::..|.|::|....::||.||::.:
  Rat   830 LIENLCMKAINQSIGRAIRHQKDFASIVLLDHRYARPSILAKLPAWIRDRV 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XpdNP_726036.2 rad3 7..717 CDD:273169 168/701 (24%)
DEXDc2 8..280 CDD:214693 50/231 (22%)
HBB 270..413 CDD:284245 33/169 (20%)
HELICc2 542..686 CDD:214694 48/157 (31%)
Ddx11XP_038940692.1 Csf4_U 23..>113 CDD:357161
rad3 225..889 CDD:273169 167/698 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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