DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Xpd and xpd-1

DIOPT Version :9

Sequence 1:NP_726036.2 Gene:Xpd / 37414 FlyBaseID:FBgn0261850 Length:769 Species:Drosophila melanogaster
Sequence 2:NP_001348650.1 Gene:xpd-1 / 175190 WormBaseID:WBGene00021752 Length:755 Species:Caenorhabditis elegans


Alignment Length:755 Identity:440/755 - (58%)
Similarity:577/755 - (76%) Gaps:7/755 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPE 65
            |:|.:|||.|.|||:|:||||..||.|:|::|||:||.|||||||||||.:||||::|||:.:|:
 Worm     1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYMISYPD 65

  Fly    66 TVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAV 130
            .:.||:|||||:|||||.:.|::.|..|:|:....|.....:.:|:|||:|::..|:..|.|..|
 Worm    66 KLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVNEPVAALRFGNTV 130

  Fly   131 DGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLA 195
            |..|..||||..|::...|.....|.|||.|  |.|...:..||::::||:..||.:..||||.|
 Worm   131 DSACQKLTASSARQKRAEDPTLEACDYFENF--EAKSVPMQNGVWNLEDLRSLGREKKICPYFTA 193

  Fly   196 RYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERST 260
            |.||..||||||||||:||||||::|||:.||:|.||||||||||||||:||||.|:::..:|:.
 Worm   194 RQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNIDNVCIESMSVAISQKNADRAL 258

  Fly   261 NALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIRN 325
            ..|..|..:|..::..::.:|..||.::|:|||....:|..|..|||||||:.:|.|.||||||.
 Worm   259 QELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERERANDERLANPVLPDQILHEAVPGNIRQ 323

  Fly   326 ADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLRTLEISD 390
            |:|||.||:||:|||:.|||.|.|:.||||.|:|||..::||||||:||||||||:|::||||:|
 Worm   324 ANHFLLFLKRFVEYIRHRLRTHQVLIESPAAFMKDILDRMCIERKPMRFCAERLSNLVKTLEITD 388

  Fly   391 LTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVV 455
            ..:..||:.:|...||||||:|||::|:||.|.....|    :..||.|:|||:.||.||||:|:
 Worm   389 NGDVWALSQVTTLCTLVSTYSKGFSVIVEPQDGSQLAV----ITLSCHDASIAIRPVMSRFQSVI 449

  Fly   456 ITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNY 520
            ||||||||::||||:|||||.|::|||||||||||.|::|::|||||.::|:||.|.|.||||||
 Worm   450 ITSGTLSPLEMYPKVLDFDPSVIASFTMTLARPCLSPLVVARGNDQVAMTSRFEQRADVAVIRNY 514

  Fly   521 GQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYV 585
            |.|::|:|..||||:|.|||||||:|:|:..||:|.|:|.|::||||||||.|..|||.||..||
 Worm   515 GNLVLEMASLVPDGMVVFFTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYV 579

  Fly   586 KACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIPYVYTQSRILKARLDYLRDQFQIREND 650
            :|||.||||||.:|||||||||:||.||.||.|:|.||||:||:||:|:|||:||||||.|:|||
 Worm   580 EACDSGRGAVLFSVARGKVSEGIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGIKEND 644

  Fly   651 FLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRLPKWIQEHLVDSFCNLSTEEAVQ 715
            |||||||||.|||:|||||.|||||:|:||||||||:|||.:||:|:||:|..:..|||.:||.|
 Worm   645 FLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLEPACTNLSIDEAAQ 709

  Fly   716 LARRWLRRMAQPFTREDQLGISLLTLAQLENME-QEKLER 754
            :|||||..|||||.:|.|||:|||....:.:.: .::.||
 Worm   710 VARRWLTLMAQPFEKEHQLGVSLLDKEMVHDSQIMKRFER 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XpdNP_726036.2 rad3 7..717 CDD:273169 418/709 (59%)
DEXDc2 8..280 CDD:214693 138/271 (51%)
HBB 270..413 CDD:284245 78/142 (55%)
HELICc2 542..686 CDD:214694 104/143 (73%)
xpd-1NP_001348650.1 rad3 7..702 CDD:273169 412/700 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165691
Domainoid 1 1.000 274 1.000 Domainoid score I940
eggNOG 1 0.900 - - E1_COG1199
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H344
Inparanoid 1 1.050 908 1.000 Inparanoid score I186
Isobase 1 0.950 - 0 Normalized mean entropy S304
OMA 1 1.010 - - QHG62382
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 1 1.000 - - FOG0005257
OrthoInspector 1 1.000 - - oto18694
orthoMCL 1 0.900 - - OOG6_101742
Panther 1 1.100 - - LDO PTHR11472
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1054
SonicParanoid 1 1.000 - - X3778
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1817.750

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