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Protein Alignment LSm1 and LSM8
DIOPT Version :9
Sequence 1: | NP_611559.1 |
Gene: | LSm1 / 37413 |
FlyBaseID: | FBgn0261067 |
Length: | 137 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_012556.2 |
Gene: | LSM8 / 853479 |
SGDID: | S000003783 |
Length: | 109 |
Species: | Saccharomyces cerevisiae |
Alignment Length: | 100 |
Identity: | 27/100 - (27%) |
Similarity: | 51/100 - (51%) |
Gaps: | 6/100 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 TAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFIIRGENV 74
:|.|.:.::|:::::..||..||..|...|:..||.:.....|| ..|: |.:.. ::||..:
Yeast 2 SATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI--SKEF--ICKAQ-LLRGSEI 61
Fly 75 VLLGEIDREKEQKL-PLKEISVDEILDAQRREQEQ 108
.|:|.||.|.:..| |:.|..|..:.|.:.:.:.:
Yeast 62 ALVGLIDAENDDSLAPIDEKKVPMLKDTKNKIENE 96
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
LSm1 | NP_611559.1 |
LSm1 |
7..80 |
CDD:212475 |
19/69 (28%) |
LSM8 | NP_012556.2 |
LSm8 |
2..85 |
CDD:212474 |
26/87 (30%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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