powered by:
Protein Alignment LSm1 and Lsm8
DIOPT Version :9
Sequence 1: | NP_611559.1 |
Gene: | LSm1 / 37413 |
FlyBaseID: | FBgn0261067 |
Length: | 137 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001100055.1 |
Gene: | Lsm8 / 296913 |
RGDID: | 1308442 |
Length: | 96 |
Species: | Rattus norvegicus |
Alignment Length: | 90 |
Identity: | 29/90 - (32%) |
Similarity: | 53/90 - (58%) |
Gaps: | 1/90 - (1%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 TAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNE-YGDIPRGVFIIRGEN 73
|:.|...:::.:.|:..|||.::|.|:..||..||:|..:.||:...:: ...:..|::|:||:|
Rat 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDN 66
Fly 74 VVLLGEIDREKEQKLPLKEISVDEI 98
|.::||||.|.:..|.|..|..:.:
Rat 67 VAVIGEIDEETDSALDLGNIRAEPL 91
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
LSm1 | NP_611559.1 |
LSm1 |
7..80 |
CDD:212475 |
22/70 (31%) |
Lsm8 | NP_001100055.1 |
LSm8 |
3..92 |
CDD:212474 |
28/89 (31%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.910 |
|
Return to query results.
Submit another query.