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Protein Alignment LSm1 and lsm1
DIOPT Version :10
| Sequence 1: | NP_611559.1 |
Gene: | LSm1 / 37413 |
FlyBaseID: | FBgn0261067 |
Length: | 137 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_595520.1 |
Gene: | lsm1 / 2540520 |
PomBaseID: | SPBC3D6.08C |
Length: | 140 |
Species: | Schizosaccharomyces pombe |
| Alignment Length: | 125 |
Identity: | 60/125 - (48%) |
| Similarity: | 86/125 - (68%) |
Gaps: | 2/125 - (1%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 6 PLAGTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFIIR 70
|...:..|::.||:|::|:||||:.|||.|||.||||||:||.|||||:|.:.||||.|||:|:|
pombe 9 PFTTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVR 73
Fly 71 GENVVLLGEIDREKEQKL--PLKEISVDEILDAQRREQEQRQEKHRLVSKALKERGLAVD 128
|||||||||:|.:||... .|:.:..:|:....:..:|::::..|...|.|...|.:||
pombe 74 GENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEEEKKKNIREKGKYLHSVGFSVD 133
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| LSm1 | NP_611559.1 |
LSm1 |
7..80 |
CDD:212475 |
46/72 (64%) |
| lsm1 | NP_595520.1 |
LSm1 |
10..83 |
CDD:212475 |
46/72 (64%) |
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