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Protein Alignment LSm1 and lsm8
DIOPT Version :9
Sequence 1: | NP_611559.1 |
Gene: | LSm1 / 37413 |
FlyBaseID: | FBgn0261067 |
Length: | 137 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_588509.1 |
Gene: | lsm8 / 2539322 |
PomBaseID: | SPCC1840.10 |
Length: | 94 |
Species: | Schizosaccharomyces pombe |
Alignment Length: | 89 |
Identity: | 28/89 - (31%) |
Similarity: | 54/89 - (60%) |
Gaps: | 1/89 - (1%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIER-IHVGNEYGDIPRGVFIIRGENVVL 76
|.:.:::::.|:..|||.::|.|:..|...||:|..:.|| |.:..:...||.||:::|||||.:
pombe 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAM 67
Fly 77 LGEIDREKEQKLPLKEISVDEILD 100
:|.::.|.:.::...:|..:.|.|
pombe 68 VGLVNEELDSEIEWTKIRGEAIPD 91
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
LSm1 | NP_611559.1 |
LSm1 |
7..80 |
CDD:212475 |
24/67 (36%) |
lsm8 | NP_588509.1 |
LSm8 |
2..90 |
CDD:212474 |
26/86 (30%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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