DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4266 and nito

DIOPT Version :9

Sequence 1:NP_001097394.1 Gene:CG4266 / 37411 FlyBaseID:FBgn0034598 Length:1306 Species:Drosophila melanogaster
Sequence 2:NP_001286174.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster


Alignment Length:746 Identity:151/746 - (20%)
Similarity:225/746 - (30%) Gaps:263/746 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   377 SEQQTIEVINLDGGDSRSPTPDRDRYKRSRRNSRSRTRSPRGRGAGGGTG--NDRRRRGTRSRSR 439
            :::.||::.|:....||||.|       :.|:|.||.....|||...|:|  .|...|.:..|.|
  Fly    10 ADRITIKIHNMKRSASRSPGP-------ASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMR 67

  Fly   440 SRSPRSSRRRGSRDRDRMDRSNRDKERDREHERERRKKGLPDIKKEHLSVCSTTLWV----GHLS 500
            .|..||..|.||..|:...|.....||...::                .:|.:.|..    ..:.
  Fly    68 RRLDRSPSRYGSPHREPYMRGPPPAERPAGYK----------------VLCVSALPPKAPDDFIE 116

  Fly   501 KLVYQEELSDTFGEYGDI-VSIDQIVPRGCAFIVMNRRQDAHKAMQALKNHKLQGRAITISWAAG 564
            :.:|:|     :.::||. |.:...:....|::.....:||.:|    |:||  .|.|.....| 
  Fly   117 ETLYRE-----YKKFGDFSVRLAHDLDERVAYVCFRTPEDAREA----KHHK--PRLIIYDKMA- 169

  Fly   565 KGVKSKEWKDYWDLELGVTYIPWSKLSSDTDFDALEEGGMFDEDTMPIQMKQKINQAKNAAKEHK 629
              :....:|.....|    |.|.....|..|::                            :.|.
  Fly   170 --IVEPVYKSTTRPE----YRPRGHSMSPPDYE----------------------------RYHY 200

  Fly   630 GASIAEAAGAPSVGVPPPNLIFGIDTTQPPPVGPVGPVGPPPGPGAPPPGLMGMVRGQFPMAPPM 694
            ..|      ....|||       :|..: ||:.|....|||                        
  Fly   201 SRS------PMGQGVP-------LDHRR-PPIDPYDRYGPP------------------------ 227

  Fly   695 GINMPPPIMMPPTNMPPPMMMPTTNMPPPMMMPPTMMPPGFPGIGGPPH---------------P 744
              :|.|..:.|....|.....|.....||:..            ||.||               |
  Fly   228 --HMHPHAVHPRDYRPLHHDYPHPPRGPPLHR------------GGHPHHLHGHAPPHQYAPMRP 278

  Fly   745 MALPPGAPFPPPGA------------VPPPIPSGGQISNSGN----VSDDQM----------DIE 783
            :|..|.||:..|.:            .|...|...:...:||    ::||::          | :
  Fly   279 LAPRPHAPYEKPESKKDKFPNYLHHVQPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVD-D 342

  Fly   784 MDLEDAPP-----------------------LPPQQQANFNPSPSNVDLSPAAM-------ANEM 818
            :|::..||                       |..|....|........::||..       |...
  Fly   343 IDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTS 407

  Fly   819 FQQRDRERDRDNRDRSRGPGNSRWGG---------------RDDVVEAAERWRAE-NGGGGGGPG 867
            ..|.:||.|             |:|.               :.:.||||.....| .|...|||.
  Fly   408 VTQLEREFD-------------RFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPE 459

  Fly   868 ----------SGLGPNAAFNEARARLNLNPIEHGMPRPD-----FMDFDNRGG--PGGPRGMGPR 915
                      .|..|.|.|..::...:.:.:|:..|..|     ...:..|||  |..||| |.|
  Fly   460 RRLRTDFAELPGATPAAPFKSSKPPYDESALEYRRPEYDPYYEESAAYAPRGGYSPYPPRG-GYR 523

  Fly   916 GNHNGGGPGGDFFPPNMNHNRFNQPTSL--MQMRIPPPASFNQRMGGPAGNGGNGVGPMFMRNQG 978
            |.....|.|...:..:.:.:|...|.||  ....:|||.........|.|...:           
  Fly   524 GRGGYRGRGRGMYHYHNDVHRPPHPGSLAGSSSSVPPPGGVEDEWRRPPGESYD----------- 577

  Fly   979 GGPGGAGPSGGGPGGAGTGGGGPGGRQQGPG 1009
               .||..|...||...:....|..|.:.||
  Fly   578 ---RGARSSSREPGVERSRSRSPLKRARSPG 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4266NP_001097394.1 CID 7..125 CDD:239621
RRM <488..>593 CDD:223796 21/109 (19%)
RRM_SCAF4_SCAF8 490..566 CDD:240673 17/80 (21%)
DUF2413 1147..>1254 CDD:287302
Herpes_DNAp_acc <1206..1304 CDD:282746
nitoNP_001286174.1 RRM <56..>223 CDD:223796 46/242 (19%)
RRM1_Spen 98..175 CDD:240754 17/106 (16%)
RRM2_Spen 312..390 CDD:240755 11/78 (14%)
RRM3_Spen 397..467 CDD:240756 16/82 (20%)
SPOC 630..789 CDD:311609
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23189
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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