DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4266 and Scaf8

DIOPT Version :9

Sequence 1:NP_001097394.1 Gene:CG4266 / 37411 FlyBaseID:FBgn0034598 Length:1306 Species:Drosophila melanogaster
Sequence 2:XP_006227920.3 Gene:Scaf8 / 245926 RGDID:708362 Length:1351 Species:Rattus norvegicus


Alignment Length:1454 Identity:431/1454 - (29%)
Similarity:592/1454 - (40%) Gaps:419/1454 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKVPGLYV 65
            ||.|..||:||..|.|.:||||||||..|||:|::|||.||||||||||||.|||||||||||||
  Rat    84 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYV 148

  Fly    66 IDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLFRCAPEDKSRIIRVLNLWQKNNVFKSEVIQP 130
            |||||||||||:|.:||:|||||..|:..||.||:||..:|||:|:|||||||||||||||:|||
  Rat   149 IDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQP 213

  Fly   131 IFDLA---------------------DPNHPIYHQMPPVGGSGGQGGGVGPGPSSSGALSLADIS 174
            :.|:|                     .|..|:....|.....|.....|....::....::|.|.
  Rat   214 LLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQIL 278

  Fly   175 SGPNGLN-----------------------SSGMEISMNSSGGDDKMGGA----MPDLSLG---- 208
            ..|.|..                       .:|:.:.:.:.........|    :..|..|    
  Rat   279 QSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLDQGVSFN 343

  Fly   209 ---HEKFGGGSSSSKRHYSEQHYSKRQSVVSCSSKTSKSHHHKREYVKSSHDIDYQVREIIEEED 270
               .::|..|..|   .:||:  ||::......|..|:|         .::.|.:|:.|.:::: 
  Rat   344 KKLMDRFDFGEDS---EHSEE--SKKEIPTPQLSHVSES---------VNNSIFHQIAEQLQQQ- 393

  Fly   271 EGLQMLMADDHHCMGDDSPPTSSNLLDEKKIKQLLNNPNVLRQLHTLQNFQNLKPQEENQKHRYQ 335
                                   ||  |:..:|||..          |..|.:.|| ::|:..:.
  Rat   394 -----------------------NL--EQLRQQLLEQ----------QQPQKVTPQ-DSQEGAFG 422

  Fly   336 DE--------ALQQHFQNVMKGNAGMPPGMGMGMNMNDSMDLNKDVEFISEQQTI---EVINLDG 389
            .|        :.||||         :.|    ..|::||:|:.:....|.|.|.:   |:..   
  Rat   423 SEHSASPSQGSSQQHF---------LEP----EANLDDSIDIQQQDMDIDEGQDVVEEEIFE--- 471

  Fly   390 GDSRSPTPDRDRY---KRSRRNSRSRTRSPRGRGAGGGTGNDRRRRGTRSRSRSRSPRSSRRRGS 451
                   |:..:.   .|||.:||||:||||.|.:...:|:.:|:...|||||||    .|:|.|
  Rat   472 -------PEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSR----ERKRKS 525

  Fly   452 RDRDRMDRSNRDKERDREHERERRKKGLPDIKKEHLSVCSTTLWVGHLSKLVYQEELSDTFGEYG 516
                  .||...:.|.||.|:||:|||||.::.:.|||||||||||.:.|...|::|::.|.|:|
  Rat   526 ------SRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFG 584

  Fly   517 DIVSIDQIVPRGCAFIVMNRRQDAHKAMQALK--NHKLQGRAITISWAAGKGVKSKEWKDYWDLE 579
            .|.||:.|.|||||::.|..|||:.:|:|.|.  ::|:..:.|.|:||..||||: |:|.:||::
  Rat   585 QIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVD 648

  Fly   580 LGVTYIPWSKLSSDTDFDALEEGGMFDEDTMPIQ---------MKQKINQAKNAAKEHKGASIAE 635
            ||||||||.|:..| |.|...||||.|::|:..:         :|:.:...::.|...|...:. 
  Rat   649 LGVTYIPWEKVKVD-DLDGFAEGGMIDQETVNAEWETVKTSEPVKETVQTTQSPAAVEKETVVT- 711

  Fly   636 AAGAPSVGVPPPNLIFGIDT--TQP-----PPVGPVGPVGPPPG--PGAPPPGLMGMVRGQF-PM 690
               ..|...|||..:..|..  |.|     ||..||....||||  |..|||    .:|..| |.
  Rat   712 ---TQSEVFPPPVTMLQIPVAPTVPAVSLVPPAFPVSMPVPPPGFSPIPPPP----FLRASFNPS 769

  Fly   691 APPMGINMPPPIMMPPTNMPPPM---MMPTTNMPPPM-MMPPTMMPPGF-----PG--IGGPPHP 744
            .||.|. ||||:  ||..:|||.   ::||:.:.||: |.|.|:...||     ||  :.|...|
  Rat   770 QPPPGF-MPPPV--PPPVVPPPAIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVAGNLAP 831

  Fly   745 MALPPGAPFPPPGAVPP----------PIPSGGQISNSGNVSDDQMDIEMDLEDAPPL---PP-- 794
            ..||.|..|.||....|          .||||   .|:..|      |..|:..:.|:   ||  
  Rat   832 STLPAGNVFNPPSKAEPEEKVPHLTEHQIPSG---ENTRPV------IPSDIPSSAPMLAQPPGA 887

  Fly   795 --------QQQANFNPSPSNVDLSPAAMANEMFQQRDRERDRDNRDRSRG--------------- 836
                    .|:.|.:.:...:.:.||.::|.......:..:..|.....|               
  Rat   888 SNTSGILCVQRPNVSSNSEILGVRPANVSNSAAIMGAQPPNMLNNSGILGIQPPNVSSGSGLLGV 952

  Fly   837 -----PGNSRWGGRDDVVEAAERWRAENGGGGGGPGSGLGPN--------AAFNEARARLNLN-- 886
                 |.||...|       .:.....|..|..|....:||.        |....|...|::.  
  Rat   953 LPPNLPNNSGLVG-------LQPPNVTNPAGLLGTQPPIGPQNLPPLTIPAQRMPALPMLDIRPG 1010

  Fly   887 -----------------PIEHGMPRPDFMDFDNRGGPGGPRGMG--------------------- 913
                             |.:.|:|.|..:|......|.||...|                     
  Rat  1011 LIAQAPGPRFPLLQPGIPPQRGIPPPSVLDAALHPPPRGPFPPGDLFSQPERPFLAPGRPNIDSV 1075

  Fly   914 -------PRGNHNGGGPGG-DF-FPPNMNHNRFNQPTSLMQMRIPPPASFNQRMGGPAG-NGGNG 968
                   |.||.|....|. |: |||.......|:         |||......:|.|.. ..|.|
  Rat  1076 PNPDKRIPLGNDNIQQEGDRDYRFPPIETREGINR---------PPPVDVRDVVGRPIDPREGPG 1131

  Fly   969 VGPMFMRNQGGGPGGAGPSGGGPGGAGTGGGGPG----GRQQGPGFFNPRNPFN----DNQRGRG 1025
            ..|:..|:..|.|         |.........||    ||:...| |.|..|:.    |.:..| 
  Rat  1132 RPPLDGRDHFGRP---------PVDMRETLVRPGLDHLGRRDHFG-FPPEKPWGPRDFDEREHR- 1185

  Fly  1026 GQSGGGVRGVGGGGGGGPGGRGRWSDDEDEGGNNFKRRGGPGGPGGNRFRGERGGEMMDDRRGNN 1090
                  |..|.||..|....|||:.    .|...|..|.||    .||..|:......||||   
  Rat  1186 ------VLPVFGGPKGLHEERGRFR----AGNYRFDPRSGP----WNRGFGQEVHRDFDDRR--- 1233

  Fly  1091 SRGGRGGPREDRERPGFGNRRGSRDDSNRHSISSTDEGNKAASETEPKPKNVETELGSTNTGAPA 1155
                         ||  ..|:..|||.: ........||:...:.            ..||..|.
  Rat  1234 -------------RP--WERQRDRDDRD-FDFCREINGNRLGRDR------------IQNTWVPP 1270

  Fly  1156 AATRVDTEEDWDQELQDYEARMEAQKPGERASQ------SANSPP-----------QEKL----P 1199
            ...||          .||.....:|:.||...|      ..::||           .|||    .
  Rat  1271 PHARV----------FDYFEGATSQRKGENVPQVNGENTERHAPPPPLPVQKDPELYEKLASSGD 1325

  Fly  1200 AENENFAKPADVTGDPLVAKSQTE 1223
            |:.|.....|.|..:.:|..::||
  Rat  1326 ADKEESGTAAGVESEAVVESTETE 1349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4266NP_001097394.1 CID 7..125 CDD:239621 88/117 (75%)
RRM <488..>593 CDD:223796 54/106 (51%)
RRM_SCAF4_SCAF8 490..566 CDD:240673 35/77 (45%)
DUF2413 1147..>1254 CDD:287302 23/98 (23%)
Herpes_DNAp_acc <1206..1304 CDD:282746 5/18 (28%)
Scaf8XP_006227920.3 CID_SCAF8 88..218 CDD:340801 95/129 (74%)
RRM_SCAF8 558..636 CDD:409895 35/77 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343050
Domainoid 1 1.000 106 1.000 Domainoid score I6454
eggNOG 1 0.900 - - E1_KOG0132
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 459 1.000 Inparanoid score I1515
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002970
OrthoInspector 1 1.000 - - otm44781
orthoMCL 1 0.900 - - OOG6_105962
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1964
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.740

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