Protein Alignment Hmg-2 and RUD3

DIOPT Version :9

• Sequence 1: NP_611553.1
• Gene: Hmg-2 / 37407
• FlyBaseID: FBgn0026582
• Length: 376
• Species: Drosophila melanogaster
• Sequence 2: NP_014859.3
• Gene: RUD3 / 854391
• SGDID: S000005742
• Length: 484
• Species: Saccharomyces cerevisiae
• Alignment Length: 414
• Identity: 89/414 - (21%)
• Similarity: 156/414 - (37%)
• Gaps: 96/414 - (23%)

  Fly    41 KGKKK-AKNPKGRHSDSDIGSELKKLAQ--RRINVAGAPKM----PLNGYVRFMNDRREELRREQ 98
            |.||| .|..|......|:...:.|..:  ..:||...|||    ..:|.|...:|..::|....
Yeast     3 KNKKKTGKKAKSHPHVEDVDETVNKPEEIINSVNVTVPPKMSTDPEADGIVASPDDEGKDLSEGV 67

  Fly    99 PQR-----------TALEHTRIIGEEWHQLPEERKLPYIEAA-AKDKAI----YQEQLQMFLKEH 147
            .::           ..||..: .|:|..:|.||.:...:|.: .||:..    ::.:|...:||.
Yeast    68 DKQKVNDGLTVDTINPLEDKK-AGDEMKELREEIERLKLELSHKKDQETPNEDFKNELANVIKER 131

  Fly   148 PEI----------------VANELAKAKKATKLDGSPKEKTPKGESALGKAKK------------ 184
            .|.                :.|::.:|:|..:   ..:|:..:.||...|.||
Yeast   132 DEFKTQYDTLLSKISSMKSIFNKMKEAQKQLE---EVQEQLTEYESQNLKLKKKLEATKTENSEL 193

  Fly   185 --------TKAKPVKRQSEDPDDVPLAKVKRAQTPPPPTPPAAPVQPPPSSVPPATPAPRPLQPG 241
                    |:.:.::::.|..::|.|....|.:.................:..........||..
Yeast   194 QSTIVTLNTELENLEKEQESTEEVFLEYESRIEALEDEKHDIIEKHSKELNTYRKEKDQLNLQVQ 258

  Fly   242 EIPIYTNEFIEHNRSTENELRT----LRKAKTDLEQQNAVLE----------QHVDNTKAGYAKV 292
            |:.|    .:|:|:...::|||    ||:|....|::.|||:          :.|||.:...|:.
Yeast   259 ELMI----ILENNKQDISDLRTERDELRQALESHEKEKAVLKNSLNDLELKIEEVDNKREEEARE 319

  Fly   293 MG-EVTELMEE-NQRLETY------LRALRQKLVAALGGISMPPL--EPSGPSVGNIDKYIRHLA 347
            .. ||..|..: :..:||:      |.:::::|.|.....||...  |.|...:..|.| :||.|
Yeast   320 RDQEVKSLRSQLDTEIETHNNDTEALESMKKQLEAMKEDASMKEKYEEESKQHILQIGK-LRHEA 383

  Fly   348 GLVTQPSNVTLIKAREALRKVDTS 371
            .::    |..|.||...|:|...|
Yeast   384 IIL----NEHLTKALAMLKKSSDS 403

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hmg-2	NP_611553.1	HMGB-UBF_HMG-box	76..141	CDD:238686	17/84 (20%)
RUD3	NP_014859.3	SMC_prok_A	88..>382	CDD:274009	61/302 (20%)
		GRAB	401..449	CDD:402134	1/3 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000