DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmg-2 and NHP6B

DIOPT Version :9

Sequence 1:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_009647.2 Gene:NHP6B / 852386 SGDID:S000002157 Length:99 Species:Saccharomyces cerevisiae


Alignment Length:100 Identity:36/100 - (36%)
Similarity:49/100 - (49%) Gaps:10/100 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KKAKNPKGRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTR 108
            |:||.||          |.||...||.....|||..|:.|:.|.|:.|:.:|.|.|..|..:..|
Yeast     5 KEAKQPK----------EPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGR 59

  Fly   109 IIGEEWHQLPEERKLPYIEAAAKDKAIYQEQLQMF 143
            |:||.|..|..|.|.||...|..||..|:.:.:::
Yeast    60 ILGERWKALTAEEKQPYESKAQADKKRYESEKELY 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmg-2NP_611553.1 HMGB-UBF_HMG-box 76..141 CDD:238686 25/64 (39%)
NHP6BNP_009647.2 NHP6B 1..>99 CDD:227935 36/99 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3288
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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