DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmg-2 and hmgb1b

DIOPT Version :9

Sequence 1:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001092721.2 Gene:hmgb1b / 795095 ZFINID:ZDB-GENE-030131-8480 Length:197 Species:Danio rerio


Alignment Length:144 Identity:36/144 - (25%)
Similarity:61/144 - (42%) Gaps:26/144 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PESPVSLPIASQ----------SMDTATIEDFDEDKPAKGKKKAKN---PKGRHSDSDIGSELKK 64
            ||:.|:....|:          :.:....||..:....:.:::.||   |||         |.||
Zfish    31 PEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYEREMKNYIPPKG---------EKKK 86

  Fly    65 LAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTRIIGEEWHQLPEERKLPYIEAA 129
                |.....|||.|.:.:..|..|.|.:::.|.|..:..:..:.:||.|:....|.|.||.:.|
Zfish    87 ----RFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGLSIGDIAKKLGEMWNSSSAEVKQPYEKKA 147

  Fly   130 AKDKAIYQEQLQMF 143
            ||.|..|.:.:.::
Zfish   148 AKLKEKYDKDIALY 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmg-2NP_611553.1 HMGB-UBF_HMG-box 76..141 CDD:238686 20/64 (31%)
hmgb1bNP_001092721.2 HMG_box_2 6..77 CDD:286146 7/45 (16%)
HMG_box 94..161 CDD:278906 20/66 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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