DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmg-2 and Hmg20a

DIOPT Version :9

Sequence 1:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_080088.1 Gene:Hmg20a / 66867 MGIID:1914117 Length:346 Species:Mus musculus


Alignment Length:389 Identity:100/389 - (25%)
Similarity:167/389 - (42%) Gaps:109/389 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PESPVSLPIASQSMDTATIEDF----------------DEDKP-----------AKGKKKAKNPK 50
            ||.|.. ..|:.:.:...:||.                :|.:|           :||:|: |.| 
Mouse    34 PEGPYG-SAATSTTNPEFVEDLSQGQLLQSEASNAVEGNEQRPEDEQRSKRGGWSKGRKR-KKP- 95

  Fly    51 GRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTRIIGEEWH 115
                               :..:.|||.||.|||||||:|||:||.::|:....|.||::|.||.
Mouse    96 -------------------LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWS 141

  Fly   116 QLPEERKLPYIEAAAKDKAIYQEQLQMFLKEHPEIVANELAKAKKATKLDGSPKEKTPKGESALG 180
            :||.|.|..|::.|.:||..|.::|:.:.|             .:|.|:.....:...||:|...
Mouse   142 KLPPEEKQRYLDEADRDKERYMKELEQYQK-------------TEAYKVFSRKTQDRQKGKSHRQ 193

  Fly   181 KAKKTKAKPVKRQSEDPDDVPLAKVKRAQTPPPPTPPAAPVQPPPSSVPPATPAPRPLQPGEIPI 245
            .|.:......::::|         ||....                              .:|||
Mouse   194 DAARQATHDHEKETE---------VKERSV------------------------------FDIPI 219

  Fly   246 YTNEFIEHNRSTENELRTLRKAKTDLEQQNAVLEQHVDNTKAGYAKVMGEVTELMEENQRLETYL 310
            :|.||:.|:::.|.|||.|||:..:.|::||.|::||::.:....|:..:|.:....|..|:.:|
Mouse   220 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHL 284

  Fly   311 RALRQKLVAALGGISMPPLEPSG--PSVGNIDKYIRHLAGLV---TQPSNVTLIKAREALRKVD 369
            ..|||.|.::...:   ||..||  |:|..||.|:..|..::   .|.:...:...||.:.::|
Mouse   285 ETLRQMLTSSFASM---PLPGSGEIPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLD 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmg-2NP_611553.1 HMGB-UBF_HMG-box 76..141 CDD:238686 32/64 (50%)
Hmg20aNP_080088.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..112 21/99 (21%)
DUF5401 <76..312 CDD:375164 84/311 (27%)
HMGB-UBF_HMG-box 102..167 CDD:238686 32/64 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..210 5/40 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8844
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32399
Inparanoid 1 1.050 128 1.000 Inparanoid score I4647
Isobase 1 0.950 - 0 Normalized mean entropy S2285
OMA 1 1.010 - - QHG45555
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003510
OrthoInspector 1 1.000 - - otm43265
orthoMCL 1 0.900 - - OOG6_106551
Panther 1 1.100 - - O PTHR46040
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3288
SonicParanoid 1 1.000 - - X2882
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.810

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