DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmg-2 and tox4

DIOPT Version :9

Sequence 1:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_012814066.1 Gene:tox4 / 395028 XenbaseID:XB-GENE-993803 Length:658 Species:Xenopus tropicalis


Alignment Length:341 Identity:73/341 - (21%)
Similarity:113/341 - (33%) Gaps:127/341 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PDAVPESPVS-LPIASQSMDTATIEDFDEDKPAKG-----KKKAKNPKGRHSDSDIGSELKKLAQ 67
            |...||..:| .|..:.|:....:|||......|.     .||.|.||                :
 Frog   226 PVQSPEDHLSPTPSPTSSLHDEDMEDFRRITAPKNIIVEQAKKPKTPK----------------K 274

  Fly    68 RRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTRIIGEEWHQLPEERKLPY---IEAA 129
            ::......|:.||:.|..|..|.:..::.:.|..|..|.::|:...|..|.||:|..|   .|||
 Frog   275 KKKKDPNEPQKPLSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 339

  Fly   130 AKD----KAIYQ-EQLQM---------------FLKEHPEIVANELAKAKKATKLDGSPKEKTPK 174
            .|:    .|:|: .||..               .|.|.| :.:..:..|....:...||...:|.
 Frog   340 KKEYLKALALYKANQLSQVAVDTVDLDPPAVPALLSESP-VPSPSVVTATSIPECVSSPSAPSPP 403

  Fly   175 GES-ALGK---AKKTKAKPVKRQSEDPDDV--------------------PLAKVK--------- 206
            .:: ||.:   ||...:|.:....::|..:                    |||:::         
 Frog   404 SQTVALPQQSIAKIIISKQILPAGQNPTSIALSQGVVTVIPATVVTSRGLPLAQLQPSPQAQRVT 468

  Fly   207 ------------RAQTPP------PP------------------TPPAAPV--------QPPPSS 227
                        |.|.||      ||                  .||..|:        ||||..
 Frog   469 RSVLQAAMQMPPRLQPPPLQQMQQPPRLQQMAPAQQPSITILQSPPPLQPMQKVRLTLQQPPPLQ 533

  Fly   228 V----PPATPAPRPLQ 239
            :    ||..|.|:.:|
 Frog   534 IKIIPPPLQPQPQAVQ 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmg-2NP_611553.1 HMGB-UBF_HMG-box 76..141 CDD:238686 23/72 (32%)
tox4XP_012814066.1 HMG-box 283..348 CDD:238037 20/64 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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