DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmg-2 and Tox4

DIOPT Version :9

Sequence 1:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_075923.2 Gene:Tox4 / 268741 MGIID:1915389 Length:619 Species:Mus musculus


Alignment Length:351 Identity:75/351 - (21%)
Similarity:126/351 - (35%) Gaps:100/351 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PDAVPESPVS-LPIASQSMDTATIEDFDEDKPAK-------GKKKAKNPKGRHSDSDIGSELKKL 65
            |...||..:| .|..:.|:....::||....||:       |||: |.||               
Mouse   165 PAQSPEDRLSTTPSPTNSLHEDGVDDFRRQLPAQKTVVVETGKKQ-KAPK--------------- 213

  Fly    66 AQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTRIIGEEWHQLPEERKLPYIEAAA 130
             :|:......|:.|::.|..|..|.:..::.:.|..|..|.::|:...|..|.||:|..|     
Mouse   214 -KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY----- 272

  Fly   131 KDKAIYQEQLQMFLKEHPEIVANELAKAKKATKLDGSPKEKTPKGESALGKAKKTKAKPVKRQSE 195
                          |...|....|..||..|.| |....:.|                       
Mouse   273 --------------KRKTEAAKKEYLKALAAYK-DNQECQAT----------------------- 299

  Fly   196 DPDDVPLAKVKRAQTPPPPTPPAAPVQPPPSSVPPATPAPRPLQPGEIP--IYTNEFIEH---NR 255
             .:.|.|..|.::|||.|         ||.::..||:|||...:...:|  |..|..:..   |:
Mouse   300 -VETVELDPVPQSQTPSP---------PPVTAADPASPAPASTESPALPPCIIVNSTLSSYVANQ 354

  Fly   256 STENELRTLRKAKTDLEQQNAVLEQHVDNTKAGYAKV------------MGEV-TELMEENQRLE 307
            ::..........|..:.:|  :|...:..::.|...|            :|:. |..::.:|:.:
Mouse   355 ASSGPGGQPNITKLIITKQ--MLPSSITMSQGGMVTVIPATVVTSRGLQVGQTSTATIQPSQQAQ 417

  Fly   308 TYLRALRQKLVAALGGISMPP--LEP 331
            ...|::.|...||...:.:||  |:|
Mouse   418 IVTRSVLQAAAAAAASMQLPPPRLQP 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmg-2NP_611553.1 HMGB-UBF_HMG-box 76..141 CDD:238686 15/64 (23%)
Tox4NP_075923.2 NHP6B 140..>306 CDD:227935 42/201 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 155..227 18/78 (23%)
Nuclear localization signal. /evidence=ECO:0000255 213..218 2/20 (10%)
HMG-box 223..288 CDD:238037 20/83 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 306..335 12/37 (32%)
PHA03160 <464..530 CDD:165431
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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