DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmg-2 and hmg-1.1

DIOPT Version :9

Sequence 1:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001370073.1 Gene:hmg-1.1 / 175081 WormBaseID:WBGene00001971 Length:95 Species:Caenorhabditis elegans


Alignment Length:119 Identity:26/119 - (21%)
Similarity:46/119 - (38%) Gaps:39/119 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KPAKGKK-----------KAKNPKGRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRR 91
            |.|.|||           |||:|                        .|||..::.:..:|.:.|
 Worm     3 KAAAGKKASPVKRVKKGGKAKDP------------------------NAPKRAMSAFFFWMQENR 43

  Fly    92 EELRREQPQRTALEHTRIIGEEWHQLPEERKLPYIEAAAKDKAIYQEQLQMFLK 145
            |.:::  |.....:..:..|.||.:|.::.:  :.:.||.||..|:..:..:.|
 Worm    44 ERIKK--PGMGVADVAKAAGVEWGKLTDKSR--WEKKAADDKKRYEVDIANYKK 93

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmg-2NP_611553.1 HMGB-UBF_HMG-box 76..141 CDD:238686 15/64 (23%)
hmg-1.1NP_001370073.1 HMGB-UBF_HMG-box 28..89 CDD:238686 15/64 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3288
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.