DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc3 and bbs4

DIOPT Version :10

Sequence 1:NP_477246.2 Gene:Tmtc3 / 37401 FlyBaseID:FBgn0020312 Length:926 Species:Drosophila melanogaster
Sequence 2:NP_001070934.3 Gene:bbs4 / 768303 ZFINID:ZDB-GENE-060126-2 Length:528 Species:Danio rerio


Alignment Length:409 Identity:90/409 - (22%)
Similarity:162/409 - (39%) Gaps:70/409 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   460 EQL-QRRGSLSWQRFSQAALAILLLTHALKTHQRNLDWRTEYSLFMSGVHVNQRNAKLYNNVGHA 523
            ||| :.:|...:..:.||  .|:.|...:   |.:|:      ||.|...:|..::.....|..:
Zfish    57 EQLHETQGMCEYAVYVQA--LIMRLEGKI---QESLE------LFQSCAIINPTSSDNLKQVARS 110

  Fly   524 LENEGKFEEALLYFQQAVRIQTDDIGAHINVGRTFNNLKRYAEAEQAYVQAKALFPQAKPGVSYH 588
            |...||.:.|:..:.:|.|:...|.....|:|..:...|.:..||:.                  
Zfish   111 LFLLGKHKAAIEVYNEAARLNQKDWEISHNLGVCYIYTKDFRSAEEQ------------------ 157

  Fly   589 ARIAPNHLNVFINLANLIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEV 653
                       :|||..:.|:..                     .|:..|.|.:....|.:|.:|
Zfish   158 -----------LNLALQLNKHDL---------------------TYMMLGKIHLLQGDTEKAIDV 190

  Fly   654 YEQALLYDNENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGG-EEA 717
            |:.|:.:..||.::...||:::::.||.|:|..:...|:...|.:.:|:|.:..::|..|. :.|
Zfish   191 YKSAVEFSPENTELLTTLGLLYMQFGKYQKAFEHLGNALTYDPNNFKAILAAGSMMQTHGDYDVA 255

  Fly   718 RRVSRSRLYKVLENDDQNEKVYFNLGMLAMDESSFDEAEQFFKRAIHLKADFRSALFNLALLLAD 782
            ....|...|.|.|    :..::.|:||....:..:..|....|||.:|.......|:||.|:...
Zfish   256 MNKYRVAAYAVPE----SPPLWNNIGMCFFGKKKYVAAISCLKRANYLSPFDWKILYNLGLVHLT 316

  Fly   783 TKRPLDAVPFLNQLIRHHPSHVKGLILLGDIYINHMKDLDEAEKCYRSILHYDPHNTQGLHNLCV 847
            .::...|..||:..|...| .:..|.:|..:.:.::.|.:.|.:.|...:..|  .:..|.||..
Zfish   317 MQQFASAFHFLSAAINLRP-RMSELYMLLAVALTNLDDAENARRSYEQAVQID--ESSPLVNLNF 378

  Fly   848 VFVERKRLAKAAACLQYAQ 866
            ......:..|.||.|||.:
Zfish   379 AVFLYNQGDKKAALLQYQE 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc3NP_477246.2 TMTC_DUF1736 323..396 CDD:462468
TPR 507..762 CDD:440225 50/255 (20%)
TPR repeat 514..542 CDD:276809 6/27 (22%)
TPR repeat 547..591 CDD:276809 6/43 (14%)
TPR repeat 598..625 CDD:276809 4/26 (15%)
TPR repeat 630..660 CDD:276809 8/29 (28%)
LapB 634..896 CDD:442196 59/234 (25%)
TPR repeat 665..693 CDD:276809 7/27 (26%)
TPR repeat 737..764 CDD:276809 7/26 (27%)
TPR repeat 803..834 CDD:276809 5/30 (17%)
TPR repeat 839..867 CDD:276809 9/28 (32%)
bbs4NP_001070934.3 None
Blue background indicates that the domain is not in the aligned region.

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