DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tmtc3 and Ttc16

DIOPT Version :9

Sequence 1:NP_477246.2 Gene:Tmtc3 / 37401 FlyBaseID:FBgn0020312 Length:926 Species:Drosophila melanogaster
Sequence 2:NP_796358.2 Gene:Ttc16 / 338348 MGIID:2443048 Length:824 Species:Mus musculus


Alignment Length:581 Identity:122/581 - (20%)
Similarity:203/581 - (34%) Gaps:155/581 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 SLLFAVHPVHTE--AVTGVVGRAELLSSIC-FLAAFLSYAKSVG-DSGCPRRTNWLTLFGCFGSC 233
            |:||....:|.:  .|...|.|||....:| |.:|..:..::.. |.|..:..|.|...      
Mouse    94 SVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDPGNNKYLNRLAFV------ 152

  Fly   234 LLASMLCKEQGITIAGICVVYELFVVHQLRPLHLCHF--VLRLFDERTEQQSPKLANPS------ 290
                       :.:.|.| :||           ||.|  .|.:|.:.::.| |:.|:.|      
Mouse   153 -----------LYLQGQC-LYE-----------LCDFQEALCVFLQASDLQ-PQNASFSYRCMAC 193

  Fly   291 --GIRRWSSSTLWKRLSFLVGITLTLLVGR----VYVMGSQLPIFTRFDNPASAADTPERQLTYG 349
              .::|:...        |..||..:..||    ||::.::|..|.:           :.:|   
Mouse   194 LLALKRYHDC--------LALITREVKQGRASADVYILRARLYNFFQ-----------KAKL--- 236

  Fly   350 YLIYLNCWLLLCPSLLCCDWTMGTVPLLQGFTD--SRNITTLLTFLALGAMVAKTCFTRNLALSR 412
                  |:..|..:||..........|||...|  .:::....| ||:...|.:.....|.|:..
Mouse   237 ------CYQDLRSALLLDPLHAQAKGLLQKMVDQAKQSLQDAST-LAVQGKVHRALKCINCAIEN 294

  Fly   413 TLIMCLGWMVLPFLPASNLFFPVGFVVAERILYMPSMGYCLLVAYGFEQLQRRGSLSWQRFSQAA 477
            .          |..|  |.||..|                        .|:||    .|:|..|.
Mouse   295 N----------PLDP--NFFFFRG------------------------TLRRR----LQQFDHAV 319

  Fly   478 LAILLLTHALKTHQRNLDWRTEYSLFMSGVHVNQRNAKLYNNVGHALENEGKFEEALLYFQQAVR 542
            ...|.....:...|.||..:.:..|.::           ||:......|.|.::|.:|...:|:|
Mouse   320 EDFLKAMDMVTDTQDNLVKQAQRQLLLT-----------YNDFAVHCYNHGAYQEGVLLLNKAIR 373

  Fly   543 IQTDDIGAHINVGRTFNNLKRYAEAEQAYVQAKALFPQAKPGVSYHARIAPNHLNVFINLANLIA 607
            .:.::.|.:||.|..|..|...|.||..|.||.||.| ...|.:....:....|       ....
Mouse   374 DEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSP-LDEGANLRMGVLQEKL-------GFCQ 430

  Fly   608 KNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDNENADIYYNLG 672
            :...:.:.|:..:.:||.......|.|::|......|..|..|:......||.:.|...:...:.
Mouse   431 QKHRQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEYPKMAAVMN 495

  Fly   673 VVF--------LEQGKSQQAQVYFNKAIE-----LYPEHE--QALL--NSAILLQELGGEE 716
            .:|        |:...::.|::..::.||     :||:..  |.||  ..|.:|.:|..:|
Mouse   496 TLFPSMTVENVLKSQVAELAKLQLSRMIENGPKNIYPQSTVVQRLLERRKAQVLVKLWKQE 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc3NP_477246.2 DUF1736 323..396 CDD:369859 14/74 (19%)
PEP_TPR_lipo <513..871 CDD:274350 51/221 (23%)
TPR repeat 514..542 CDD:276809 7/27 (26%)
TPR repeat 547..591 CDD:276809 16/43 (37%)
TPR repeat 598..625 CDD:276809 2/26 (8%)
TPR repeat 630..660 CDD:276809 7/29 (24%)
TPR repeat 665..693 CDD:276809 3/35 (9%)
TPR repeat 737..764 CDD:276809
TPR repeat 803..834 CDD:276809
TPR repeat 839..867 CDD:276809
Ttc16NP_796358.2 TPR repeat 75..103 CDD:276809 3/8 (38%)
TPR 87..381 CDD:223533 79/396 (20%)
TPR repeat 108..138 CDD:276809 8/29 (28%)
TPR repeat 143..170 CDD:276809 9/55 (16%)
TPR repeat 183..213 CDD:276809 6/37 (16%)
TPR repeat 218..245 CDD:276809 7/46 (15%)
TPR repeat 299..327 CDD:276809 12/57 (21%)
TPR repeat 347..373 CDD:276809 7/36 (19%)
TPR repeat 378..408 CDD:276809 12/29 (41%)
TPR_11 381..451 CDD:290150 19/77 (25%)
TPR_1 382..410 CDD:278916 13/27 (48%)
TPR repeat 413..448 CDD:276809 4/41 (10%)
TPR_11 426..485 CDD:290150 12/65 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1124
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.