DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc3 and Ifit2

DIOPT Version :10

Sequence 1:NP_477246.2 Gene:Tmtc3 / 37401 FlyBaseID:FBgn0020312 Length:926 Species:Drosophila melanogaster
Sequence 2:NP_001019924.1 Gene:Ifit2 / 294091 RGDID:1307804 Length:464 Species:Rattus norvegicus


Alignment Length:407 Identity:85/407 - (20%)
Similarity:146/407 - (35%) Gaps:133/407 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   602 LANLIA-------KNQTRLE---EADHLYRQ----AISMRS-----DYVQAYINRGDILMK---L 644
            :.||:|       .|:..|:   ||:...||    .|.::|     :|...|.:.|.:...   |
  Rat    53 MCNLLAYVKHCRGLNEAALKCLGEAEDFIRQQHPDQIEIKSLVTWGNYAWVYYHMGQLSKAQEYL 117

  Fly   645 NRTAQAQEVYEQALLYDNENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILL 709
            ::..|..:.:......:|...|.......:...:.::::.:|.|.||:|..|::.::....||..
  Rat   118 DKVKQVCKKFSSPYRIENPVLDCEEGWARLKCTKNQNERMKVCFEKALEKDPKNPESTSGWAIAN 182

  Fly   710 QELGG-----------EEARRVSRSRLY-KV-----LENDDQNEKVYFNLGMLAMDESSF----- 752
            ..|..           |:|..:|....| ||     ||...:|.........|..|.|:.     
  Rat   183 YRLDDWPASNDYIDSLEQAISLSPDNTYVKVLLAMKLEEVHENRAKELVEEALKKDPSAIDTMLG 247

  Fly   753 -----------DEAEQFFKRAI-----------HLKADFRSALFNLALLLADT-----KRPLDAV 790
                       |.|.|..|:|:           :|...:||.:.:: |...:|     :..|:|:
  Rat   248 AAKFYVKVHDTDRAIQLLKKALESMPNNAYVHYYLGCCYRSKVLHI-LNTEETTSNGNREKLEAL 311

  Fly   791 --PFLN---------QLIRHHPSHVKGLILLGDIYINHMKDLDEAEKCYRSILHYD--PHNTQGL 842
              |.||         ::|.:..||:.||      |:. .|..:||:..::...:.|  |...|.|
  Rat   312 IQPALNHLRKAEDIKEMIENSCSHLAGL------YVT-TKQYEEADYYFQKEFNKDLRPLPKQLL 369

  Fly   843 H----NLCVVFVERKRLAKAAACLQYAQRLAPAEDYIGRHLQIVLARLQKINKLPESAPE----- 898
            |    |.  .|.|||  .:..|...|.:.:                   |||:  ||.|:     
  Rat   370 HLRYGNF--QFYERK--CEDRAIYHYMEGV-------------------KINR--ESKPKGKMRD 409

  Fly   899 -------RKLAYEDYDP 908
                   |:|:.::.||
  Rat   410 KLRKLALRRLSRDESDP 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc3NP_477246.2 TMTC_DUF1736 323..396 CDD:462468
TPR 507..762 CDD:440225 43/214 (20%)
TPR repeat 514..542 CDD:276809
TPR repeat 547..591 CDD:276809
TPR repeat 598..625 CDD:276809 9/36 (25%)
TPR repeat 630..660 CDD:276809 5/32 (16%)
LapB 634..896 CDD:442196 67/330 (20%)
TPR repeat 665..693 CDD:276809 5/27 (19%)
TPR repeat 737..764 CDD:276809 8/53 (15%)
TPR repeat 803..834 CDD:276809 7/30 (23%)
TPR repeat 839..867 CDD:276809 10/31 (32%)
Ifit2NP_001019924.1 TPR 55..270 CDD:440225 44/214 (21%)
TPR repeat 96..122 CDD:276809 4/25 (16%)
TPR repeat 127..167 CDD:276809 6/39 (15%)
TPR 165..430 CDD:440225 63/295 (21%)
TPR repeat 242..270 CDD:276809 5/27 (19%)
TPR repeat 275..325 CDD:276809 10/50 (20%)
TPR repeat 330..355 CDD:276809 8/31 (26%)
Blue background indicates that the domain is not in the aligned region.

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