DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc3 and F38B6.6

DIOPT Version :9

Sequence 1:NP_477246.2 Gene:Tmtc3 / 37401 FlyBaseID:FBgn0020312 Length:926 Species:Drosophila melanogaster
Sequence 2:NP_509123.2 Gene:F38B6.6 / 185454 WormBaseID:WBGene00018175 Length:690 Species:Caenorhabditis elegans


Alignment Length:845 Identity:234/845 - (27%)
Similarity:376/845 - (44%) Gaps:184/845 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 HQYAPSTLPRERE-REGATNSPQRNLLEFLCICVACIVCYYNSTQCGLVFDDISAIRDNKDLRPH 73
            |:.:.|..|.:|. :|...:...||||..:.:   .|:.|.:......||||..:|.:|..:...
 Worm     7 HKVSGSCDPGDRSPKEKGRSQGIRNLLILISL---SIIPYLSCLGGDFVFDDAESIVNNPIVNGK 68

  Fly    74 TPLINVFLNDFWGTPMRKEQSHKSYRPLTVLTFRFNYLLHALEPFGYHLVNLLLHLSVCLLWRRV 138
            .||:.:|..||||..:....|||||||:|..||..||.||.....|||:||::.|....|::.::
 Worm    69 DPLLQIFSRDFWGRSISSSNSHKSYRPVTTFTFWLNYKLHETSTLGYHVVNIICHTVATLVFYKL 133

  Fly   139 CRLLLRQCAASGSNAISAPSSSSVSQLNTCAFVASLLFAVHPVHTEAVTGVVGRAELLSSICFLA 203
            .:.|                 ..:......||.||:||||||||||||..:.||||||.:|..||
 Worm   134 GKQL-----------------EHIFDFFNIAFSASILFAVHPVHTEAVANITGRAELLMTIFSLA 181

  Fly   204 AFLSYAKSVGDSGCPRRTNWLTLFGC-FGSCLLASMLCKEQGITIAGICVVYELFVVHQLRPLHL 267
            |.:.:.|:       |..|      | |...::.|.|.||||:....|.:..: |:.|:     .
 Worm   182 ALILHVKN-------REIN------CKFVLLVILSTLSKEQGLMTIPIAICID-FLAHR-----S 227

  Fly   268 CHFVLRLFDERTEQQSPKLANPSGIRRWSSSTLWKRLSFLVGITLTLLVG--RVYVMGSQLPIFT 330
            |                                  |.:|:..|.|.:.:|  |:.|.|.:...||
 Worm   228 C----------------------------------RSNFVRMICLLVAIGFLRMMVNGFEAAKFT 258

  Fly   331 RFDNPASAADTP-ERQLTYGYLIYLNCWLLLCPSLLCCDWTMGTVPLLQGFTDSRNITTLL--TF 392
            :.|||.:..::. .|.:.|.|:...:.:||:.|..||.|::||.:..:....|.|.::.:|  |.
 Worm   259 KLDNPTAFLNSKFYRMINYTYIWLYHAYLLVIPVNLCFDYSMGCISSITTMWDLRALSPVLIFTI 323

  Fly   393 LALGAMVAKTCFTRNLALSRTLIMCLGWMVLPFLPASNLFFPVGFVVAERILYMPSMGYCLLVAY 457
            :.:|......|      .:.||...:|  ::.||||||:||.|||.:|||:||:||.|:|||.|.
 Worm   324 VIIGVKFQNEC------RAFTLSSLMG--IISFLPASNIFFTVGFSIAERVLYLPSAGFCLLCAI 380

  Fly   458 GFEQLQRRGSLSWQRFSQAALAILLLTHALKTHQRNLDWRTEYSLFMSGVHVNQRNAKLYNNVGH 522
            .|::|    |:.::.....::.::||..: ||::|:.:|:||.||:.||:.|...|||::.|:|.
 Worm   381 IFKKL----SVHFKNADVLSITLILLLIS-KTYRRSGEWKTELSLYSSGLSVCPTNAKIHYNLGK 440

  Fly   523 ALENEGKFEEALLYFQQAVRIQTDDIGAHINVGRTFNNLKRYAEAEQAYVQAKALFPQAKPGVSY 587
            .|.:.|..::|...:..|:::                        :.:|.||             
 Worm   441 VLGDNGLTKDAEKNYWNAIKL------------------------DPSYEQA------------- 468

  Fly   588 HARIAPNHLNVFINLANLIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQE 652
                    ||   ||.||:.|:... :.|:.|..:|:::|..:..|::|.|...|.|.:..:|::
 Worm   469 --------LN---NLGNLLEKSGDS-KTAESLLARAVTLRPSFAVAWMNLGISQMNLKKYYEAEK 521

  Fly   653 VYEQALLYDNENADIYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELGGEEA 717
            ..:.:||....:|...:||||::....:.:.|...:..|..:.|.|.|:..|..::|..| .:.:
 Worm   522 SLKNSLLIRPNSAHCLFNLGVLYQRTNRDEMAMSAWKNATRIDPSHSQSWTNLFVVLDHL-SQCS 585

  Fly   718 RRVSRSRLYKVLENDDQNEKVYFNLGMLAMDESSFDEAEQFFKRAIHLKADFRSALF--NLALLL 780
            :.:..|  |:.|.:.....:|:..:|......|:|..||...|.||.|..  .|.||  ||.:| 
 Worm   586 QVIDLS--YQALSSVPNESRVHMQIGSCHAKHSNFTAAENHIKSAIDLNP--TSVLFHANLGIL- 645

  Fly   781 ADTKRPLDAVPFLNQLIRHHPSHVKGLILLGDIYINHMKDLDEAEKCYRSILHYDPHNTQGLHNL 845
                        ..::.||                      .|||..||.:|..|..|.....||
 Worm   646 ------------YQRMSRH----------------------KEAESQYRIVLALDSKNIVAKQNL 676

  Fly   846  845
             Worm   677  676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc3NP_477246.2 DUF1736 323..396 CDD:369859 21/75 (28%)
PEP_TPR_lipo <513..871 CDD:274350 75/335 (22%)
TPR repeat 514..542 CDD:276809 8/27 (30%)
TPR repeat 547..591 CDD:276809 3/43 (7%)
TPR repeat 598..625 CDD:276809 8/26 (31%)
TPR repeat 630..660 CDD:276809 7/29 (24%)
TPR repeat 665..693 CDD:276809 7/27 (26%)
TPR repeat 737..764 CDD:276809 8/26 (31%)
TPR repeat 803..834 CDD:276809 6/30 (20%)
TPR repeat 839..867 CDD:276809 2/7 (29%)
F38B6.6NP_509123.2 DUF1736 251..325 CDD:285594 21/73 (29%)
TPR_11 431..497 CDD:290150 22/114 (19%)
TPR_1 432..465 CDD:278916 8/56 (14%)
TPR repeat 432..460 CDD:276809 8/27 (30%)
TPR_17 455..486 CDD:290167 11/79 (14%)
TPR_11 467..531 CDD:290150 21/88 (24%)
TPR repeat 467..494 CDD:276809 12/51 (24%)
TPR repeat 499..529 CDD:276809 7/29 (24%)
TPR_11 500..565 CDD:290150 15/64 (23%)
TPR_1 500..532 CDD:278916 8/31 (26%)
TPR repeat 534..560 CDD:276809 6/25 (24%)
TPR repeat 568..596 CDD:276809 6/30 (20%)
TPR_11 601..666 CDD:290150 24/101 (24%)
TPR repeat 601..631 CDD:276809 9/29 (31%)
TPR repeat 636..664 CDD:276809 12/62 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 125 1.000 Domainoid score I3400
eggNOG 1 0.900 - - E2759_KOG1124
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3607
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1320023at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.770

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