DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc3 and tmtc1

DIOPT Version :10

Sequence 1:NP_477246.2 Gene:Tmtc3 / 37401 FlyBaseID:FBgn0020312 Length:926 Species:Drosophila melanogaster
Sequence 2:XP_002942298.2 Gene:tmtc1 / 100498549 XenbaseID:XB-GENE-6033540 Length:1168 Species:Xenopus tropicalis


Alignment Length:918 Identity:294/918 - (32%)
Similarity:450/918 - (49%) Gaps:154/918 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 VACIVCYYNSTQCGLVFDDISAIRDNKDLRPHTPLINVFLNDFWGTPMRKEQSHKSYRPLTVLTF 106
            :...:|:..|.....|.||:.||.:|.|.|..|||.::|.|||||..|....||||||||.||:|
 Frog   326 ILATLCFVRSVFGEFVHDDVWAILNNPDSRAETPLSSIFGNDFWGKAMNDNTSHKSYRPLCVLSF 390

  Fly   107 RFNYLLHALEPFGYHLVNLLLHLSVCLLWRRVCRLLLRQCAASGSNAISAPSSSSVSQLNTCAFV 171
            |.|..|..|....:|.:|::||.:|..|....|                   |::|.:....|..
 Frog   391 RINVFLGGLNAIYFHAINIVLHAAVSSLLMFTC-------------------STAVFEDKRLALA 436

  Fly   172 ASLLFAVHPVHTEAVTGVVGRAELLSSICFLAAFLSYAKSVGDSGCPRRT-------NWLTLFGC 229
            |:|||:.||:|||||.|:||||::||.:.||..||||.:|: |||.||.:       .:|.|...
 Frog   437 AALLFSAHPIHTEAVAGIVGRADVLSCLLFLLTFLSYIRSM-DSGPPRHSFPPTSAPLFLLLSLI 500

  Fly   230 FGSCLLASMLCKEQGITIAGICVVYELFVVHQLRPLHLCHFVLRLFDERTEQQSPKLANPSGIRR 294
            .|:   .::|.||.|||:.|:|:.|:|        |.||                    |:..:|
 Frog   501 LGT---GAVLVKETGITVFGVCLTYDL--------LLLC--------------------PTRCKR 534

  Fly   295 WSS----STLW-------KRLSFLVGITLTLLVGRVYVMGSQLPIFTRFDNPASAADTP-ERQLT 347
            :||    :::|       ||.:.:......:|..|:.:||..:|:|:..|||||.:..| .|.||
 Frog   535 YSSPDPRASIWYVAGPFLKRAALVSLYVALVLYFRLRIMGGSMPLFSEQDNPASFSPYPLTRFLT 599

  Fly   348 YGYLIYLNCWLLLCPSLLCCDWTMGTVPLLQGFTDSRNITTLLTFLALGAMVAKTC--FTRNLAL 410
            |.||:..|.||||.|..||.||.:|::||:....|.||:.||| |:.:...:|..|  |.:. |.
 Frog   600 YLYLLAFNSWLLLAPITLCYDWQVGSIPLINSLWDVRNLATLL-FVGIVGSLALHCLAFLKR-AP 662

  Fly   411 SRTLIMCLGWMVLPFLPASNLFFPVGFVVAERILYMPSMGYCLLVAYGFEQLQ----RRGSLSWQ 471
            .|.:::.|.::|.||:|||||||.||||||||:|||||||:|:|..:|.:.||    :|.|||  
 Frog   663 RREVLVGLLFLVFPFIPASNLFFRVGFVVAERVLYMPSMGFCILCVHGLKVLQSHVGQRRSLS-- 725

  Fly   472 RFSQAALAILLLTHALKTHQRNLDWRTEYSLFMSGVHVNQRNAKLYNNVGHALENEGKFEEALLY 536
              .......|||..:.|:..::..||:..:||.|||.....|||::.|..:.|:::.:.:||:::
 Frog   726 --LTLCFLFLLLLFSCKSLSQSECWRSREALFRSGVQTLPHNAKVHYNYANFLKDQSRKDEAIMH 788

  Fly   537 FQQAVRIQTDDIGAHINVGRTFNNLKRYAEAEQAYVQAKALFPQAKPGVSYHARIAPNHLNVFIN 601
            ::..:|:......|..|:|....|.   .|||:.|.:|              ..|:|.|.....|
 Frog   789 YKTVLRLYPKHSSALNNLGTLTANT---TEAEEYYRRA--------------LMISPQHSRALFN 836

  Fly   602 LANLIAKNQTRLEEADHLYRQAISMRSDYVQAYINRGDILMKLNRTAQAQEVYEQALLYDNENAD 666
            |.||: :|:.:.:||:.|.|:::...|.:..||.:.|.:|....|..:|.:||:..:....||:|
 Frog   837 LGNLL-RNKGQDDEAELLLRESLHYGSYFGDAYSSLGSLLADQKRYEEADDVYQTGIKSCPENSD 900

  Fly   667 IYYNLGVVFLEQGKSQQAQVYFNKAIELYPEHEQALLNSAILLQELG-GEEARRVSRSRLYKVLE 730
            ::.|.||..::..|||:|:.::..|:.|.|:|..|:||...|.:.|| .:||.:..|..|....|
 Frog   901 LHNNYGVFLVDMEKSQKAESHYLHALHLRPDHHVAMLNLGRLYRSLGQNKEAEKWYRKALQISRE 965

  Fly   731 NDDQNEKVYFNLGMLAMDESSFDEAEQFFKRAIHLKADFRSALFNLALLLADTKRPLDA------ 789
            .|     |...||.|..:....:||.:.::.|:.|.........:||.:||...:..:|      
 Frog   966 AD-----VISPLGALLYNTGQHEEARRLYQEAVGLHPRNIQIRLSLAQVLAVLGQIHEAEALAYG 1025

  Fly   790 ----VP-------FLNQLIRHHPSHVKGL--------------ILLGDIY---------INHMKD 820
                ||       .|:.:......:||.|              .||.:::         :||   
 Frog  1026 IAAEVPDCTECFRLLSAIYSKREDYVKALELIDFALQMKSNDAKLLSELHFTRGNQLRELNH--- 1087

  Fly   821 LDEAEKCYRSILHYDPHNTQGLHNLCVVFVERKRLAKAAACLQYAQRLAPAEDYIGRHLQIVLAR 885
            |:||.:.|..:...:|...|...|:..:...:.....|.|..|.|..|.|....:..:    ||:
 Frog  1088 LEEAFQSYERVAELNPTQAQAWMNMGGIRHMQGDYTSARAFYQKAAVLDPDSKLLKEN----LAK 1148

  Fly   886 LQKI-NKL 892
            ||:| |:|
 Frog  1149 LQRIENRL 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc3NP_477246.2 TMTC_DUF1736 323..396 CDD:462468 35/73 (48%)
TPR 507..762 CDD:440225 71/255 (28%)
TPR repeat 514..542 CDD:276809 6/27 (22%)
TPR repeat 547..591 CDD:276809 9/43 (21%)
TPR repeat 598..625 CDD:276809 9/26 (35%)
TPR repeat 630..660 CDD:276809 8/29 (28%)
LapB 634..896 CDD:442196 76/301 (25%)
TPR repeat 665..693 CDD:276809 9/27 (33%)
TPR repeat 737..764 CDD:276809 7/26 (27%)
TPR repeat 803..834 CDD:276809 11/53 (21%)
TPR repeat 839..867 CDD:276809 6/27 (22%)
tmtc1XP_002942298.2 KLF18_N 101..>246 CDD:410566
TMTC_DUF1736 574..648 CDD:462468 35/74 (47%)
TPR repeat 766..794 CDD:276809 6/27 (22%)
LapB 774..1024 CDD:442196 73/272 (27%)
TPR repeat 799..826 CDD:276809 9/43 (21%)
TPR repeat 831..858 CDD:276809 9/27 (33%)
TPR repeat 866..893 CDD:276809 8/26 (31%)
TPR repeat 898..928 CDD:276809 10/29 (34%)
LapB 906..1167 CDD:442196 65/263 (25%)
TPR repeat 933..961 CDD:276809 9/27 (33%)
TPR repeat 966..993 CDD:276809 7/31 (23%)
TPR repeat 999..1030 CDD:276809 5/30 (17%)
TPR repeat 1035..1062 CDD:276809 4/26 (15%)
TPR repeat 1067..1101 CDD:276809 8/36 (22%)
TPR repeat 1106..1132 CDD:276809 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.

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