DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9394 and Gdpd3

DIOPT Version :10

Sequence 1:NP_611548.1 Gene:CG9394 / 37399 FlyBaseID:FBgn0034588 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001292116.1 Gene:Gdpd3 / 293490 RGDID:1308386 Length:320 Species:Rattus norvegicus


Alignment Length:377 Identity:79/377 - (20%)
Similarity:133/377 - (35%) Gaps:134/377 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 HLLHTSFSGTEGDVSIDLISPLWQRVVGQLRIEYLHIRPMEKDGFDLRTSFANYWRSNWTALEIG 348
            |||||.::                                  .||.:|.:              .
  Rat    27 HLLHTPWA----------------------------------PGFSIRLA--------------A 43

  Fly   349 HR-GLGKSLTVTTNAAPLIENTVATMLASSELGADLVEFDVQLTSDLVPIIHHDFSIRVCIDSKT 412
            || |.|:.|..|..|   |||::|..       |||:|||.|||.|.|.::.||.:    :..::
  Rat    44 HRGGSGERLENTMEA---IENSMAQR-------ADLLEFDCQLTRDGVVVVSHDKN----LSRQS 94

  Fly   413 PTSKDDLTEVLLKDISYEQL----KDLKTYQIVGNKIVEYPAHNNVEPPEQRLFPTLQDFFERVN 473
            ..:||      :..:.:.||    ::|:.|...|     :.||.:     .|...:|:|.|::..
  Rat    95 GLNKD------INTLDFAQLPLYKEELEIYFSPG-----HFAHGS-----DRHMISLEDVFQKFP 143

  Fly   474 LSTGFDIEIKWPQQRADGLFESEQTLDKNLFADRILAVVRRHGCGRLNVIKSFDADLCSLLRFKQ 538
             .|...:|||         .::|:.:.|      :..:.||.   ..|.|..:.::..|:::..:
  Rat   144 -RTPMCLEIK---------EKNEELIHK------VANMARRF---NRNEITIWTSEKNSIMKRCK 189

  Fly   539 HMYPVLFLSSSKENVFNDPRTSTVEQSVNFAQAFDLGGVS----PNAVFVKADPGLVQRAKAQVP 599
            ...|.:            |...|:.:|......:.||.:.    |...|....|.::.|  ...|
  Rat   190 AANPEM------------PTAFTIWRSFWILLLYYLGLLPFVSIPEKFFFCFLPTIINR--TYFP 240

  Fly   600 IVLLWGSDLKD--------RESIDWFLQQGPTGVIYDRLDLWLGANRTSAFE 643
            ....|.:.|..        |:|:..:||.....|::     |. .|..|.||
  Rat   241 FSCGWMNKLSATVTKWAIMRKSLIQYLQDRGVQVLF-----WC-LNEESDFE 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9394NP_611548.1 CBM20 47..169 CDD:449530
GDPD_GDE5 345..630 CDD:176549 66/301 (22%)
Gdpd3NP_001292116.1 GDPD_GDE4 13..310 CDD:176553 79/377 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.